Showing : glad • reset
0
votes
0
replies
5.1k
views
Reading GFF files into R and GenomeGraphs
Coverage Annotation Visualization convert GLAD GenomeGraphs rtracklayer IRanges Coverage
14.7 years ago Michael Dondrup ▴ 140
0
votes
4
replies
3.1k
views
retrieving mRNA sequences via biomaRt
GLAD biomaRt GLAD biomaRt
updated 14.7 years ago by ★ 13k • written 14.7 years ago by ▴ 30
0
votes
0
replies
2.6k
views
gene set enrichment analysis of RNA-Seq data
Microarray limma GLAD edgeR goseq Microarray limma GLAD edgeR goseq
12.0 years ago Paolo Guarnieri ▴ 20
0
votes
2
replies
2.2k
views
problem installing 'GLAD' package
cdf GLAD cdf GLAD
13.4 years ago Shenglin Zheng ▴ 20
0
votes
6
replies
2.2k
views
HTqPCR
qPCR GO GLAD HTqPCR qPCR GO GLAD HTqPCR
updated 11.8 years ago by ★ 2.0k • written 11.9 years ago by ▴ 40
0
votes
0
replies
2.2k
views
makeTranscriptDbFromGFF fails on NCBI Bacteria
Alignment Annotation Normalization GO Preprocessing Clustering Cancer Organism probe GLAD
10.7 years ago Sarah Pohl ▴ 30
1
vote
1
reply
2.0k
views
multiple threads on QuasR
Alignment GLAD QuasR Alignment GLAD QuasR
11.0 years ago Michael Stadler ▴ 350
0
votes
3
replies
1.9k
views
Diffbind: Binding Affinity Heatmap
Sequencing GO Clustering GLAD edgeR DESeq DiffBind Sequencing GO Clustering GLAD edgeR
10.7 years ago Rory Stark ★ 5.2k
0
votes
13
replies
1.9k
views
PWMscoreStartingAt and ambiguous subject seqs
Cancer Biostrings GLAD Cancer Biostrings GLAD
updated 11.9 years ago by 16k • written 11.9 years ago by ▴ 740
0
votes
7
replies
1.8k
views
segmentation for Affy SNP arrays
SNP CGH affy GLAD snapCGH SNP CGH affy GLAD snapCGH
updated 16.6 years ago by ▴ 250 • written 16.6 years ago by ▴ 440
0
votes
13
replies
1.7k
views
problem with data processing in R
PROcess GLAD PROcess GLAD
updated 14.4 years ago by ★ 1.7k • written 14.4 years ago by ▴ 170
0
votes
1
reply
1.7k
views
Issue of installing the GLAD package
GLAD GLAD
updated 10.9 years ago by 1.6k • written 10.9 years ago by ★ 13k
0
votes
0
replies
1.7k
views
getSeq human genomic sequences
Annotation Cancer BSgenome PROcess GLAD BSgenome IRanges Annotation Cancer BSgenome GLAD
15.2 years ago Hervé Pagès 16k
0
votes
1
reply
1.6k
views
Design matrix for time course analysis with maSigPro
GLAD maSigPro GLAD maSigPro
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ▴ 10
0
votes
3
replies
1.6k
views
Merging various panel for flow cytometry
GLAD flowCore flowViz GLAD flowCore flowViz
updated 11.4 years ago by ★ 1.3k • written 11.4 years ago by ▴ 160
0
votes
1
reply
1.6k
views
[Bioc-sig-seq] as.data.frame on GRanges object with DNAStringSet in values
Cancer Biostrings GLAD Cancer Biostrings GLAD
updated 12.6 years ago by ★ 11k • written 12.6 years ago by 16k
0
votes
1
reply
1.6k
views
Rgraphviz installing problem
Rgraphviz GLAD Rgraphviz GLAD
updated 12.3 years ago by 25k • written 12.3 years ago by ▴ 10
0
votes
0
replies
1.5k
views
Cutoff to use for IQR filtering in genefilter
genefilter affy limma GeneSpring affylmGUI GLAD SIM genefilter affy limma GeneSpring
15.8 years ago Mark Cowley ▴ 400
0
votes
0
replies
1.5k
views
I: R: R: R: Probe-level analysis of exon arrays using xps
Annotation Normalization Preprocessing Breast Prostate probe GLAD Category xps Annotation
12.6 years ago Lavorgna Giovanni ▴ 80
0
votes
8
replies
1.5k
views
Gene Selection
GLAD GLAD
updated 19.2 years ago by ▴ 210 • written 19.2 years ago by ▴ 310
0
votes
4
replies
1.5k
views
Positive correlation between dye-swap technical replicates
Normalization Clustering probe limma GLAD Normalization Clustering probe limma GLAD
14.3 years ago Michał Góralski ▴ 40
0
votes
2
replies
1.5k
views
DESeq - Estimating Dispersion with Technical Replicates
GLAD DESeq GLAD DESeq
updated 11.6 years ago by ★ 13k • written 11.6 years ago by ▴ 20
0
votes
4
replies
1.4k
views
HTqPCR problems
qPCR GO Preprocessing GLAD HTqPCR qPCR GO Preprocessing GLAD HTqPCR
updated 11.8 years ago by ▴ 340 • written 11.8 years ago by ★ 2.0k
0
votes
7
replies
1.4k
views
problem to compute copy number with crlmm
GLAD crlmm GLAD crlmm
updated 14.5 years ago by ▴ 250 • written 14.5 years ago by ▴ 40
0
votes
4
replies
1.4k
views
running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 16.6 years ago by ▴ 230 • written 16.6 years ago by ▴ 110
0
votes
2
replies
1.4k
views
error in loading GLAD package
GLAD GLAD
updated 12.5 years ago by 25k • written 12.5 years ago by ▴ 110
0
votes
1
reply
1.4k
views
[Rocky] - Clarification for finding SNPs at 3'UTR, 5'UTR, CDS genomic regions
SNP Cancer GLAD SNP Cancer GLAD
updated 13.3 years ago by 16k • written 13.3 years ago by ▴ 30
0
votes
2
replies
1.3k
views
Adding a text label to the classvec colour bar in heatplot
Clustering Cancer graph GLAD Clustering Cancer graph GLAD
updated 15.7 years ago by ▴ 460 • written 15.7 years ago by ★ 6.5k
0
votes
0
replies
1.3k
views
Metrology for Gene Expression -- Postdoc Opportunities at NIST
Microarray PROcess GLAD attract Microarray PROcess GLAD attract
19.4 years ago Marc Salit ▴ 80
0
votes
1
reply
1.3k
views
how to do paired t-tests for multiple subgroups [was: warnings or potential problems in limma procedure]
Cancer limma GLAD Category Cancer limma GLAD Category
updated 13.0 years ago by ▴ 100 • written 13.0 years ago by 50k
0
votes
4
replies
1.3k
views
Problem in reading JPEG files for CGH arrays
aCGH Genetics aCGH GLAD aCGH Genetics aCGH GLAD
updated 15.3 years ago by 21k • written 15.3 years ago by ▴ 360
0
votes
2
replies
1.3k
views
Problem with Annotation of Mouse4302.db in simpleaffy
Annotation mouse4302 simpleaffy GLAD Annotation mouse4302 simpleaffy GLAD
updated 15.3 years ago by 65k • written 15.2 years ago by ▴ 40
0
votes
1
reply
1.3k
views
write.XStringView/write.XStringSet highly inefficient (solved)
Cancer BSgenome PROcess GLAD BSgenome Cancer BSgenome PROcess GLAD BSgenome
updated 13.8 years ago by ★ 13k • written 13.8 years ago by ▴ 550
0
votes
1
reply
1.3k
views
edgeR glm fit error
GO GLAD edgeR GO GLAD edgeR
13.2 years ago Gordon Smyth 50k
0
votes
3
replies
1.3k
views
GLAD crashes when built with gcc-4.8
GLAD GLAD
updated 10.3 years ago by 25k • written 10.3 years ago by ▴ 70
0
votes
2
replies
1.2k
views
Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH
updated 16.6 years ago by ▴ 40 • written 16.6 years ago by ▴ 110
0
votes
0
replies
1.2k
views
[Rocky] - R code for PGSEA package to identify differentially expressed genes
GO affy limma GLAD PGSEA GSEABase GO affy limma GLAD PGSEA GSEABase
12.2 years ago Valerie Obenchain ★ 6.8k
0
votes
0
replies
1.2k
views
DiffBind (Please add me to the Dropbox containing the vignette data)
GLAD edgeR DiffBind DESeq2 GLAD edgeR DiffBind DESeq2
10.1 years ago Rory Stark ★ 5.2k
0
votes
0
replies
1.1k
views
error in plotKEGGGraph
Pathways GLAD KEGGgraph Pathways GLAD KEGGgraph
13.6 years ago Robert M. Flight ▴ 280
0
votes
0
replies
1.1k
views
Fwd: RCytoscape couldn't connect to host
GO GLAD RCytoscape GO GLAD RCytoscape
12.0 years ago Paul Shannon ▴ 750
0
votes
1
reply
1.1k
views
Normalized data in expresso and Expression Console differ
Normalization GLAD Normalization GLAD
updated 14.8 years ago by ★ 3.9k • written 14.9 years ago by ▴ 10
0
votes
0
replies
1.1k
views
question regarding ChIPPeakAnno use
Annotation annotate GLAD ChIPpeakAnno Annotation annotate GLAD ChIPpeakAnno
11.6 years ago Julie Zhu ★ 4.3k
0
votes
2
replies
1.1k
views
hyperGTest and HyperGParams
Microarray Annotation GLAD Category Microarray Annotation GLAD Category
updated 16.5 years ago by ★ 5.5k • written 16.5 years ago by ▴ 500
0
votes
1
reply
1.1k
views
Help with GenePix files
Normalization marray GLAD Normalization marray GLAD
updated 17.1 years ago by ★ 7.4k • written 17.1 years ago by ▴ 310
0
votes
0
replies
1.1k
views
HTqPCR problems
Microarray qPCR GO Preprocessing GLAD HTqPCR Microarray qPCR GO Preprocessing GLAD
11.7 years ago cfischer ▴ 10
0
votes
4
replies
1.1k
views
Discrepancy on results from gcrma function and justGCRMA
gcrma GLAD gcrma GLAD
updated 14.2 years ago by 65k • written 14.2 years ago by ★ 2.0k
0
votes
1
reply
1.1k
views
Help needed with aroma.affymetrix package to extract copy-numbers
Normalization cdf GLAD Normalization cdf GLAD
updated 16.2 years ago by ★ 2.4k • written 16.2 years ago by ▴ 270
0
votes
0
replies
1.1k
views
Detecting overrepresented genomic loci
aCGH Clustering CGH geneplotter DNAcopy aCGH GLAD aCGH Clustering CGH geneplotter aCGH
19.1 years ago Yi, Andrew ▴ 20
0
votes
0
replies
1.1k
views
browseGenome width question (rtracklayer)
Epigenetics GO hgu95av2 GLAD rtracklayer Epigenetics GO hgu95av2 GLAD rtracklayer
15.2 years ago Michael Lawrence ▴ 620
0
votes
0
replies
1.0k
views
Analysing categorical CGH data
Clustering Cancer CGH GLAD made4 Clustering Cancer CGH GLAD made4
17.7 years ago Aedin Culhane ▴ 510
50 results • Page 1 of 1
Recent ...
Replies
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Awards • All
Popular Question to shepherl 3.8k
Popular Question to James W. MacDonald 65k
Scholar to Michael Love 41k
Supporter to JKim • 0
Popular Question to Gordon Smyth 50k
Locations • All
France, 2 minutes ago
Melbourne, Australia, 14 minutes ago
Canada, 23 minutes ago
Canada, 35 minutes ago
United States, 44 minutes ago
Traffic: 885 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6