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goexpress
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reset
0
votes
2
replies
3.1k
views
Can't install GO.db
GOexpress
GO.db
GOSemSim
2.8 years ago
Chruut
• 0
2
votes
8
replies
1.9k
views
Errors when plotting data using heatmap_GO (GOexpress)
GOexpress
updated 2.9 years ago by
kevin.rue
▴ 350 • written 2.9 years ago by
grolo
• 0
0
votes
0
replies
689
views
GOexpress pvalue and gene sets
GOexpress
3.6 years ago
jms2520
▴ 10
0
votes
4
replies
1.6k
views
GOexpress - Error when plotting expression data
RNA-seq
transcriptomics
gene ontology
gene expression
GOexpress
updated 5.7 years ago by
kevin.rue
▴ 350 • written 5.7 years ago by
atorson
• 0
1
vote
2
replies
1.8k
views
Obtain the first gene expression heatmaps from GOexpress package gene ontology enrichment analysis results
GOexpress
heatmap
gene ontology
plot
updated 6.0 years ago by
kevin.rue
▴ 350 • written 6.0 years ago by
Antonio Campos
• 0
0
votes
2
replies
1.5k
views
'GO_analyse' function error
goexpress
ExpressionSet
GO_analyse
6.1 years ago
rezashiralmohammad
• 0
2
votes
4
replies
1.8k
views
GOexpress - Trouble with subset_scores result (<0 rows>)
GOexpress
subset_scores
<0 rows>
7.7 years ago
sina.zboron
• 0
9
votes
8
replies
5.3k
views
heatmap of genes based on enriched GO categories
goexpress
gopro
8.6 years ago
Bogdan
▴ 670
5
votes
4
replies
2.1k
views
Contrasts in GOexpress analysis?
gene ontology
goexpress
updated 8.7 years ago by
kevin.rue
▴ 350 • written 8.7 years ago by
mforde84
▴ 20
0
votes
3
replies
4.5k
views
Gene ontology and pathway analysis in R - replicate ToppGene features; best strategy for getting annotations?
topgo
biomart
gene ontology
goexpress
pathway analysis
updated 9.4 years ago by
kevin.rue
▴ 350 • written 9.4 years ago by
Darya Vanichkina
▴ 130
2
votes
6
replies
3.2k
views
GOexpress: GO_analyse function throws Error: Space required after the Public Identifier
goexpress
updated 9.5 years ago by
kevin.rue
▴ 350 • written 9.5 years ago by
martin.hoelzer
▴ 20
3
votes
2
replies
1.7k
views
Is it common to get all 0 values when running the randomForest step in GOexpress?
goexpress
updated 9.9 years ago by
kevin.rue
▴ 350 • written 9.9 years ago by
willj
▴ 30
3
votes
6
replies
2.2k
views
GOexpress error at pValue_GO step
software error
goexpress
updated 9.9 years ago by
kevin.rue
▴ 350 • written 9.9 years ago by
kcamnairb
▴ 10
6
votes
7
replies
4.6k
views
GOexpress: use DESeq2 data object as input
GOexpress
deseq2
expressionset
9.9 years ago
martin.hoelzer
▴ 20
14 results • Page
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Answer: Sharing a collection of datasets in ExperimentHub
by
shepherl
4.2k
107 packages would be a lot! It is certainly possible (and recommended) to implement one package that utilizes ExperimentHub for controlli…
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Yes. Your packages have odd Y version numbers (where the version is X.Y.Z). That means they are devel packages (release versions have even …
Comment: GO.db and others package Download failure
by
Skyler
• 0
Am I using Bioc-devel?
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Is there a reason to use Bioc-devel? If not, you should be using the release version (which I am, and which installs `GO.db` without compla…
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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