Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
goexpress
•
reset
0
votes
2
replies
3.4k
views
Can't install GO.db
GOexpress
GO.db
GOSemSim
3.2 years ago
Chruut
• 0
2
votes
8
replies
2.1k
views
Errors when plotting data using heatmap_GO (GOexpress)
GOexpress
updated 3.2 years ago by
kevin.rue
▴ 350 • written 3.2 years ago by
grolo
• 0
0
votes
0
replies
738
views
GOexpress pvalue and gene sets
GOexpress
3.9 years ago
jms2520
▴ 10
0
votes
4
replies
1.7k
views
GOexpress - Error when plotting expression data
RNA-seq
transcriptomics
gene ontology
gene expression
GOexpress
updated 6.0 years ago by
kevin.rue
▴ 350 • written 6.0 years ago by
atorson
• 0
1
vote
2
replies
2.0k
views
Obtain the first gene expression heatmaps from GOexpress package gene ontology enrichment analysis results
GOexpress
heatmap
gene ontology
plot
updated 6.3 years ago by
kevin.rue
▴ 350 • written 6.3 years ago by
Antonio Campos
• 0
0
votes
2
replies
1.5k
views
'GO_analyse' function error
goexpress
ExpressionSet
GO_analyse
6.4 years ago
rezashiralmohammad
• 0
2
votes
4
replies
1.9k
views
GOexpress - Trouble with subset_scores result (<0 rows>)
GOexpress
subset_scores
<0 rows>
8.0 years ago
sina.zboron
• 0
9
votes
8
replies
5.6k
views
heatmap of genes based on enriched GO categories
goexpress
gopro
8.9 years ago
Bogdan
▴ 670
5
votes
4
replies
2.2k
views
Contrasts in GOexpress analysis?
gene ontology
goexpress
updated 9.0 years ago by
kevin.rue
▴ 350 • written 9.0 years ago by
mforde84
▴ 20
0
votes
3
replies
4.7k
views
Gene ontology and pathway analysis in R - replicate ToppGene features; best strategy for getting annotations?
topgo
biomart
gene ontology
goexpress
pathway analysis
updated 9.7 years ago by
kevin.rue
▴ 350 • written 9.7 years ago by
Darya Vanichkina
▴ 130
2
votes
6
replies
3.3k
views
GOexpress: GO_analyse function throws Error: Space required after the Public Identifier
goexpress
updated 9.9 years ago by
kevin.rue
▴ 350 • written 9.9 years ago by
martin.hoelzer
▴ 20
3
votes
2
replies
1.8k
views
Is it common to get all 0 values when running the randomForest step in GOexpress?
goexpress
updated 10.2 years ago by
kevin.rue
▴ 350 • written 10.2 years ago by
willj
▴ 30
3
votes
6
replies
2.4k
views
GOexpress error at pValue_GO step
software error
goexpress
updated 10.2 years ago by
kevin.rue
▴ 350 • written 10.2 years ago by
kcamnairb
▴ 10
6
votes
7
replies
4.8k
views
GOexpress: use DESeq2 data object as input
GOexpress
deseq2
expressionset
10.3 years ago
martin.hoelzer
▴ 20
14 results • Page
1 of 1
Recent ...
Replies
Comment: Joining different datasets and analyzing using the group-specific condition effe
by
James W. MacDonald
68k
There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…
Comment: Joining different datasets and analyzing using the group-specific condition effe
by
jason.chai
• 0
@mikelove Could I please ask if a similar method would work my set of samples? I have 255 samples which have been generated from 76 subject…
Comment: Clarification on counting in Rsubread (featureCounts)
by
Luca
• 0
Thanks to both of you for your helpful suggestions. The counting was already strand-specific at both the exon and gene levels. I resolved …
Comment: Clarification on counting in Rsubread (featureCounts)
by
Gordon Smyth
53k
Have you told featureCounts to do strand-specific counting? As pointed out by Frances Turner, you can lose reads if they overlap the gene …
Answer: Clarification on counting in Rsubread (featureCounts)
by
Frances Turner
▴ 20
You should look at the summary files produced by feature counts. This gives a breakdown of what happened to reads that were not assigned. Y…
Votes
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
C: RNA-Seq analysis with Limma/edgeR, time course experiment, aberrant results
Awards
• All
Commentator
to
James W. MacDonald
68k
Great Question
to
fl
▴ 20
Popular Question
to
Lluís Revilla Sancho
▴ 760
Popular Question
to
Gordon Smyth
53k
Popular Question
to
Aleena_Ensembl
▴ 30
Locations
• All
United States,
7 minutes ago
Germany,
1 hour ago
Canada,
1 hour ago
Italy,
2 hours ago
United States,
2 hours ago
Traffic: 1287 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6