Bioconductor Goexpress

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GOexpress GO.db GOSemSim

3.0 years ago Chruut • 0

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1.9k

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GOexpress

updated 3.0 years ago by kevin.rue ▴ 350 • written 3.0 years ago by grolo • 0

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705

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GOexpress

3.7 years ago jms2520 ▴ 10

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RNA-seq transcriptomics gene ontology gene expression GOexpress

updated 5.8 years ago by kevin.rue ▴ 350 • written 5.8 years ago by atorson • 0

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GOexpress heatmap gene ontology plot

updated 6.1 years ago by kevin.rue ▴ 350 • written 6.1 years ago by Antonio Campos • 0

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goexpress ExpressionSet GO_analyse

6.2 years ago rezashiralmohammad • 0

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GOexpress subset_scores <0 rows>

7.8 years ago sina.zboron • 0

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goexpress gopro

8.7 years ago Bogdan ▴ 670

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gene ontology goexpress

updated 8.8 years ago by kevin.rue ▴ 350 • written 8.8 years ago by mforde84 ▴ 20

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topgo biomart gene ontology goexpress pathway analysis

updated 9.5 years ago by kevin.rue ▴ 350 • written 9.5 years ago by Darya Vanichkina ▴ 130

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3.2k

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goexpress

updated 9.7 years ago by kevin.rue ▴ 350 • written 9.7 years ago by martin.hoelzer ▴ 20

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goexpress

updated 10.0 years ago by kevin.rue ▴ 350 • written 10.0 years ago by willj ▴ 30

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software error goexpress

updated 10.0 years ago by kevin.rue ▴ 350 • written 10.0 years ago by kcamnairb ▴ 10

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GOexpress deseq2 expressionset

10.1 years ago martin.hoelzer ▴ 20

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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