Bioconductor Help

Showing : help • reset

vote

replies

6.0k

views

clusterprofiler input files error help

updated 7.2 years ago by Guangchuang Yu ★ 1.2k • written 7.2 years ago by Mataivic • 0

vote

replies

4.2k

views

help DESeq2 DESeqDataSetFromMatrix rownames

updated 23 months ago by Sanatan • 0 • written 3.0 years ago by dorina.jamniczky • 0

votes

replies

2.5k

views

edger differential gene expression without replicate nested design help

updated 7.8 years ago by Aaron Lun ★ 28k • written 7.8 years ago by knipehf • 0

vote

replies

2.4k

views

HELP ChIPpeakAnno

2.5 years ago lexi.kellington • 0

votes

2.0k

views

help software error

updated 5.3 years ago by Martin Morgan 25k • written 5.3 years ago by mafusa20 • 0

votes

replies

1.8k

views

R deseq2 differential gene expression help

7.9 years ago • updated 7.8 years ago fischer87 • 0

votes

replies

1.7k

views

STRINGdb HELP

updated 14 months ago by Rodrigo ▴ 10 • written 2.2 years ago by Jessica ▴ 10

votes

replies

1.6k

views

HELP ChIC.data PeakDetection ChipOnChipData

19 months ago • updated 18 months ago michela ▴ 20

votes

replies

1.4k

views

DESeq2 HELP

14 months ago Michael • 0

votes

replies

1.4k

views

RNASeqData RNASeq GEO RNASeqR HELP

3.1 years ago hgalmoore • 0

votes

replies

1.4k

views

limma help

updated 8.4 years ago by svlachavas ▴ 830 • written 8.4 years ago by libya.tahani • 0

votes

replies

1.2k

views

DESeq2 volcanoplot deseq HELP contrast

updated 14 months ago by Basti ▴ 780 • written 14 months ago by Michael • 0

votes

replies

1.2k

views

HELP HelloRanges

updated 18 months ago by James W. MacDonald 65k • written 18 months ago by michela ▴ 20

votes

replies

1.0k

views

limma time series help

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by rm1238 • 0

votes

replies

717

views

ChIPpeakAnno Normalization EnrichedHeatmap HELP TxDb.Celegans.UCSC.ce11.refGene

18 months ago michela ▴ 20

votes

569

views

HELP Data

updated 20 months ago by Guido Hooiveld ★ 3.9k • written 20 months ago by mcclurejenniferc • 0

votes

330

views

bachelorthesis help HELP

updated 8 months ago by DrFizz • 0 • written 9 months ago by melander • 0

17 results • Page 1 of 1

Recent ...

Replies

Comment: Help with error using camera() in limma by Chris • 0

Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.

Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0

Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.

Comment: Limma, eBayes different sample size of groups and adjustment by XW • 0

Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks

Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy) by James W. MacDonald 65k

The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …

Comment: Help with error using camera() in limma by James W. MacDonald 65k

Again, this is where you need to read the help page and try to diagnose. It says ``` index: an index vector or a list of index vectors. …

Votes

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Make custom Txdb class objects from Txdb

Comment: Help with error using camera() in limma

Answer: Help with error using camera() in limma

Awards • All