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edger differential gene expression without replicate nested design help

updated 7.9 years ago by Aaron Lun ★ 28k • written 7.9 years ago by knipehf • 0

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HELP HelloRanges

updated 19 months ago by James W. MacDonald 65k • written 19 months ago by michela ▴ 20

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RNASeqData RNASeq GEO RNASeqR HELP

3.1 years ago hgalmoore • 0

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STRINGdb HELP

updated 15 months ago by Rodrigo ▴ 10 • written 2.2 years ago by Jessica ▴ 10

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DESeq2 HELP

15 months ago • updated 14 months ago Michael • 0

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clusterprofiler input files error help

updated 7.2 years ago by Guangchuang Yu ★ 1.2k • written 7.2 years ago by Mataivic • 0

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help DESeq2 DESeqDataSetFromMatrix rownames

updated 23 months ago by Sanatan • 0 • written 3.1 years ago by dorina.jamniczky • 0

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HELP ChIPpeakAnno

2.5 years ago lexi.kellington • 0

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limma help

updated 8.5 years ago by svlachavas ▴ 830 • written 8.5 years ago by libya.tahani • 0

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HELP ChIC.data PeakDetection ChipOnChipData

19 months ago michela ▴ 20

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R deseq2 differential gene expression help

7.9 years ago fischer87 • 0

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limma time series help

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by rm1238 • 0

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help software error

updated 5.4 years ago by Martin Morgan 25k • written 5.4 years ago by mafusa20 • 0

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bachelorthesis help HELP

updated 9 months ago by DrFizz • 0 • written 9 months ago by melander • 0

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DESeq2 volcanoplot deseq HELP contrast

updated 15 months ago by Basti ▴ 780 • written 15 months ago by Michael • 0

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ChIPpeakAnno Normalization EnrichedHeatmap HELP TxDb.Celegans.UCSC.ce11.refGene

19 months ago michela ▴ 20

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HELP Data

updated 20 months ago by Guido Hooiveld ★ 4.0k • written 20 months ago by mcclurejenniferc • 0

17 results • Page 1 of 1

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Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …

Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0

> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…

Comment: maSigPro genes from clusters by anne-laure • 0

Hello It is a litlle bit late but I do not get how to extract the genes from each cluster identified by see.genes(sigs$sig.genes$Day4vs…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

Your code seems ok. Does the vignette produce the same error? [link to STRINGdb R script vignette][1] [1]: https://www.bioconductor.or…

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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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