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clusterprofiler input files error help

updated 7.2 years ago by Guangchuang Yu ★ 1.2k • written 7.2 years ago by Mataivic • 0

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help DESeq2 DESeqDataSetFromMatrix rownames

updated 23 months ago by Sanatan • 0 • written 3.1 years ago by dorina.jamniczky • 0

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edger differential gene expression without replicate nested design help

updated 7.9 years ago by Aaron Lun ★ 28k • written 7.9 years ago by knipehf • 0

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HELP ChIPpeakAnno

2.5 years ago lexi.kellington • 0

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help software error

updated 5.4 years ago by Martin Morgan 25k • written 5.4 years ago by mafusa20 • 0

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R deseq2 differential gene expression help

7.9 years ago fischer87 • 0

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STRINGdb HELP

updated 15 months ago by Rodrigo ▴ 10 • written 2.2 years ago by Jessica ▴ 10

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HELP ChIC.data PeakDetection ChipOnChipData

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DESeq2 HELP

15 months ago Michael • 0

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RNASeqData RNASeq GEO RNASeqR HELP

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limma help

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DESeq2 volcanoplot deseq HELP contrast

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HELP HelloRanges

updated 19 months ago by James W. MacDonald 66k • written 19 months ago by michela ▴ 20

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limma time series help

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by rm1238 • 0

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ChIPpeakAnno Normalization EnrichedHeatmap HELP TxDb.Celegans.UCSC.ce11.refGene

19 months ago michela ▴ 20

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HELP Data

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bachelorthesis help HELP

updated 9 months ago by DrFizz • 0 • written 9 months ago by melander • 0

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Comment: Ensembl plants at annotationHub? by Johannes Rainer ★ 2.0k

You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…

Comment: Errors in chromosome annotation-biomaRt by blackwidowzzz • 0

I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …

Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 66k

If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …

Comment: Help with ENmix readidat by James W. MacDonald 66k

Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …

Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 66k

In that case, probably easiest to subset to the groups being compared.

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Answer: Error retrieving ensembl gene id using biomaRt...

Comment: LRT, more than two conditions and pairwise comparisons

Answer: Control group between 2 batches have different expression in RNAseq data

Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?

Comment: DESeq2- Mysterious interaction suppresses DEGs

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