Showing : homo sapiens • reset
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Understand the chromosome name in homo sapiens gene database
homo sapiens chromosome
updated 7.4 years ago by 68k • written 7.4 years ago by • 0
0
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5
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1.9k
views
TxDb.Hsapiens.UCSC.hg19.knownGene - Error: subscript contains out-of-bounds indices for some Entrez codes
bioconductor genomicranges homo sapiens
updated 8.6 years ago by 68k • written 8.6 years ago by • 0
3
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5
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10k
views
Error selecting Gene Symbol using Entrez ID via Homo.sapiens
homo sapiens
updated 10.5 years ago by ★ 7.2k • written 10.5 years ago by ▴ 50
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2
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views
Weirdness with the human org.Hs.eg.db annotation database
annotationdbi homo sapiens
updated 11.0 years ago by ★ 7.2k • written 11.0 years ago by ▴ 220
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2
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views
BSgenome
Homo sapiens BSgenome BSgenome Homo sapiens BSgenome BSgenome
updated 11.2 years ago by 68k • written 11.2 years ago by ▴ 290
2
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8
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2.6k
views
Genes annotated to GO:0031281 using org.Hs.eg.db
GO Homo sapiens GO Homo sapiens
updated 11.6 years ago by 68k • written 11.6 years ago by ★ 1.1k
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2
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2.0k
views
GO-Pathways using RDAVIDWebService
Pathways Homo sapiens RDAVIDWebService Pathways Homo sapiens RDAVIDWebService
updated 11.7 years ago by ▴ 370 • written 11.7 years ago by ▴ 50
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edgeR dispersion value
Homo sapiens Homo sapiens
updated 12.3 years ago by ▴ 880 • written 12.3 years ago by ★ 13k
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getGEO vs GEOmetadb
Lung Homo sapiens Pseudomonas aeruginosa GEOmetadb Lung Homo sapiens Pseudomonas aeruginosa
12.3 years ago Jack Zhu ▴ 170
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3
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2.8k
views
DEXSeq Issue
Alignment Annotation GO Homo sapiens TranscriptDb PROcess GenomicFeatures DEXSeq Alignment
updated 12.4 years ago by 43k • written 12.4 years ago by ▴ 150
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DEXSeq Problems
Alignment Homo sapiens PROcess Alignment Homo sapiens PROcess
updated 12.4 years ago by ★ 3.8k • written 12.4 years ago by ▴ 150
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1.4k
views
Bioconductor Digest, Vol 119, Issue 1
Preprocessing Homo sapiens affy oligo RPA Preprocessing Homo sapiens affy oligo RPA
updated 12.8 years ago by ▴ 20 • written 12.8 years ago by ▴ 40
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normalise many cel files TCBB-2007-11-0161_noCEL.tar
Cancer Homo sapiens affy Cancer Homo sapiens affy
updated 12.8 years ago by ▴ 20 • written 12.8 years ago by 25k
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normalise many cel files TCBB-2007-11-0161_noCEL.tar
Homo sapiens affy Homo sapiens affy
12.8 years ago Guest User ★ 13k
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Fwd: ASSIST on contrast matrix
Network Homo sapiens limma PROcess Network Homo sapiens limma PROcess
13.1 years ago Seyed Ahmad Mousavi ▴ 10
2
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2
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1.5k
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How updated is hom.Hs.inp.db? (to get homologous mapping between mouse and human symbol)?
GO Homo sapiens GO Homo sapiens
updated 13.2 years ago by ★ 7.2k • written 13.2 years ago by ▴ 950
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views
bioMart
Homo sapiens biomaRt Homo sapiens biomaRt
13.7 years ago Bogdan ▴ 670
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1
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1.3k
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custom SNPlocs / BSgenome package
SNP Annotation Organism Homo sapiens BSgenome SNPlocs BSgenome SNP Annotation Organism
updated 13.9 years ago by 16k • written 13.9 years ago by ▴ 100
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illuminaHumanv4 mappings
Infrastructure Cancer Homo sapiens probe AnnotationDbi ASSIGN Infrastructure Cancer probe
14.0 years ago Mark Cowley ▴ 910
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1
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1.5k
views
illuminaHumanv4 mappings
Cancer Homo sapiens Cancer Homo sapiens
updated 14.0 years ago by ★ 1.1k • written 14.1 years ago by ▴ 910
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topTable (fit) annotation
Annotation GO Homo sapiens annotate limma GEOquery Annotation GO Homo sapiens annotate
14.1 years ago Jing Huang ▴ 380
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1
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1.4k
views
working with ROOT and the xps problem
miRNA Microarray Annotation Homo sapiens probe xps miRNA Microarray Annotation probe xps
updated 14.6 years ago by ★ 3.9k • written 14.6 years ago by ★ 1.5k
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Ensembl mart release 57: Useful information
SNP GO Homo sapiens zebrafish SNP GO Homo sapiens zebrafish
15.6 years ago Rhoda Kinsella ▴ 660
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1.3k
views
Is there anyway to map a set of EST id's to genBank accessions?
Annotation Homo sapiens annotate Annotation Homo sapiens annotate
updated 15.7 years ago by ▴ 610 • written 15.7 years ago by ▴ 10
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R: difference between "hsa-miR-xxx" and "hsa-miR-xxx*"
miRNA Homo sapiens biomaRt microRNA miRNA Homo sapiens biomaRt microRNA
16.0 years ago mauede@alice.it ▴ 870
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3
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1.8k
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R: R: How can I trace back transcription target genes from the miRNAs file downloadable from miRbase ?
Transcription miRNA Cancer Homo sapiens biomaRt microRNA Transcription miRNA Cancer
16.0 years ago mauede@alice.it ▴ 870
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3
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R: How can I trace back transcription target genes from the miRNAs file downloadable from miRbase ?
Transcription miRNA Homo sapiens biomaRt Transcription miRNA Homo sapiens biomaRt
updated 16.0 years ago by ▴ 580 • written 16.0 years ago by ▴ 870
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4
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biomaRt vs biomart.org
Homo sapiens biomaRt Homo sapiens biomaRt
16.1 years ago • updated 16.0 years ago Tefina Paloma ▴ 220
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error with "retrain" method of gene2pathway package
Pathways GO Organism Homo sapiens hgu133plus2 gene2pathway Pathways GO Organism
updated 16.1 years ago by 68k • written 16.1 years ago by ▴ 340
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Ensembl mart release 55: Useful information
Danio rerio Homo sapiens probe Danio rerio Homo sapiens probe
16.2 years ago Rhoda Kinsella ▴ 660
0
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0
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1.2k
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Can I use such identifier to interrogate BioMart ?
miRNA Homo sapiens biomaRt miRNA Homo sapiens biomaRt
16.3 years ago mauede@alice.it ▴ 870
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I: Help with symbol names mapping between miRecords and BioMart
GO Homo sapiens biomaRt GO Homo sapiens biomaRt
16.3 years ago mauede@alice.it ▴ 870
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0
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950
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one more doubt about the (miRNA, gene-3UTR) pairs from Ensembl and BioMart
miRNA Homo sapiens miRNA Homo sapiens
16.3 years ago mauede@alice.it ▴ 870
0
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6
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2.0k
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R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics Homo sapiens biomaRt PING miRNA Biophysics Homo sapiens biomaRt PING
updated 16.3 years ago by ★ 3.4k • written 16.3 years ago by ▴ 870
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R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
16.3 years ago michael watson IAH-C ★ 3.4k
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R: R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
updated 16.3 years ago by 21k • written 16.3 years ago by ▴ 870
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1
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4.5k
views
how to get the miRNA, identifier from database Ensembl through biomaRt functions ???
miRNA Homo sapiens biomaRt miRNA Homo sapiens biomaRt
updated 16.3 years ago by 21k • written 16.3 years ago by ▴ 870
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2
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1.6k
views
R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Homo sapiens biomaRt miRNA Homo sapiens biomaRt
updated 16.3 years ago by ★ 13k • written 16.3 years ago by ▴ 870
0
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0
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1.9k
views
how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Homo sapiens biomaRt miRNA Homo sapiens biomaRt
16.3 years ago michael watson IAH-C ★ 3.4k
0
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0
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1.5k
views
how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Homo sapiens biomaRt miRNA Homo sapiens biomaRt
16.3 years ago mauede@alice.it ▴ 870
0
votes
2
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1.9k
views
how to find the validated pair (miRNA, gene-3'UTR-sequence)
miRNA Homo sapiens miRNA Homo sapiens
updated 16.3 years ago by 21k • written 16.3 years ago by ▴ 870
0
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1
reply
3.2k
views
How to find SNP names
SNP Homo sapiens SNPlocs SNP Homo sapiens SNPlocs
updated 16.3 years ago by 16k • written 16.3 years ago by ▴ 90
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2
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1.6k
views
Nimblegen / Ringo / Preprocess error: inherits(myRG, "RGList") is not TRUE
Preprocessing Homo sapiens probe Ringo Preprocessing Homo sapiens probe Ringo
16.4 years ago JEAN-YVES SGRO ▴ 20
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3
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7.5k
views
org.Hs.eg.db -- Entrez ID to Gene Symbol conversion
Cancer Homo sapiens convert Cancer Homo sapiens convert
updated 16.6 years ago by ▴ 10 • written 16.6 years ago by ★ 1.1k
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1.2k
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Annotation package for Agilent human CGH 44B
Annotation CGH Homo sapiens Annotation CGH Homo sapiens
16.7 years ago Daren Tan ▴ 190
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984
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Re: maPlot and defining controls
Microarray Homo sapiens Microarray Homo sapiens
21.9 years ago Chris Bye ▴ 30
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1
reply
1.2k
views
Problems highlight control spots in MA plots
Microarray Homo sapiens Microarray Homo sapiens
updated 21.9 years ago by ▴ 920 • written 21.9 years ago by ▴ 20
47 results • Page 1 of 1
Recent ...
Replies
Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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