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downloads http429 http Bioconductor

6 months ago shepherl 4.1k

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import.bw rtracklayer Windows http

3.2 years ago sla • 0

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5.4k

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import.bw rtracklayer http RStudio

updated 4.2 years ago by Michael Lawrence ★ 11k • written 4.2 years ago by Søren • 0

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genomicdatacommons tcga gdc rest http

updated 6.0 years ago by Sean Davis 21k • written 6.0 years ago by mk ▴ 20

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2.0k

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gviz gviz-package rtracklayer http

7.0 years ago enricoferrero ▴ 660

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3.3k

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arrayexpress xml rcurl http EBI

updated 7.3 years ago by Wolfgang Huber ★ 13k • written 7.3 years ago by Bernd Klaus ▴ 610

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2.2k

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security http source installation

updated 9.7 years ago by Dan Tenenbaum ★ 8.2k • written 9.7 years ago by will.townes • 0

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Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Comment: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k

I think I explained what the differences between approach 1 and 2 is in my answer. I assume that the tutorial uses vst because it is varian…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

Thank you ATpoint for your responses. I am a bit confused because the difference between the two approaches is the selection of the genes…

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Comment: can't install tscR

Answer: Csaw normalization strategies - general inquiry

A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

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