Bioconductor Interaction

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6.1k

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LRT DESeq2 interaction

updated 3.1 years ago by Kevin Blighe ★ 3.9k • written 3.2 years ago by annamariabugaj ▴ 10

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3.4k

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DifferentialExpression contrasts interaction DESeq2

written 2.0 years ago by Nicole ▴ 10

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1.1k

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limma interaction

3.7 years ago Sindre ▴ 110

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1.4k

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deseq2 interaction

updated 4.3 years ago by sebastian.lobentanzer ▴ 50 • written 4.3 years ago by ktrns • 0

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deseq2 interaction model

updated 3.9 years ago by Michael Love 42k • written 3.9 years ago by aec ▴ 90

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825

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graphite interaction

updated 4.1 years ago by gabriele.sales ▴ 100 • written 4.1 years ago by emisecherre • 0

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799

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DESeq2 interaction pairwise

2.7 years ago Lucas • 0

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699

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DESeq2 interaction coefficient LinearModel RNASeq

updated 17 months ago by Michael Love 42k • written 18 months ago by Pedro Milanez-Almeida ▴ 10

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986

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DEXSeq interaction

5.3 years ago zhenzuo2 • 0

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739

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edger deseq2 interaction design matrix

updated 5.2 years ago by James W. MacDonald 65k • written 5.2 years ago by Assa Yeroslaviz ★ 1.5k

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1.2k

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random effects interaction limma rna-seq

5.0 years ago flippy23 • 0

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839

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mircomb mrna mirna degs interaction

3.9 years ago andreia ▴ 10

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1.0k

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DESeq2 interaction differential expression

updated 3.8 years ago by Michael Love 42k • written 3.8 years ago by charles.foster ▴ 160

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662

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interaction DESeq2

updated 21 months ago by swbarnes2 ★ 1.4k • written 21 months ago by Tait • 0

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863

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edge differential gene expression timecourse interaction

5.7 years ago rubi ▴ 110

15 results • Page 1 of 1

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Answer: Differential gene expression analysis results by ATpoint ★ 4.1k

Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…

Comment: deseq2 results by sajadahmad41454 • 0

thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.

Comment: deseq2 results by swbarnes2 ★ 1.4k

It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…

Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Dylan.Sheerin • 0

Thank you very much, Gordon. I'll give voomLmFit a go!

Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Gordon Smyth 50k

Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…

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Comment: deseq2 results

Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie

Answer: Extremely small p-values using Limma for proteomic data

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