Bioconductor Interactionset

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DEGcomparison DESeq2 InteractionSet pvalue

11 months ago paria.alipour • 0

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1.0k

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InteractionSet GInteractions

12 months ago Sarah ▴ 10

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689

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InteractionSet subsetByOverlaps GenomicInteractions

19 months ago LaureTomas ▴ 10

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1.1k

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InteractionSet BuildReport

2.0 years ago martin.grigorov ▴ 10

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1.4k

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InteractionSet

3.5 years ago noag • 0

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1.2k

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S4 Rcpp InteractionSet IRanges Rle

updated 4.6 years ago by Aaron Lun ★ 28k • written 4.6 years ago by lklei001 • 0

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1.1k

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diffHic HiC InteractionSet

updated 4.8 years ago by Aaron Lun ★ 28k • written 4.8 years ago by girardot • 0

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1.5k

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genomicinteractions gviz interactionset

updated 6.1 years ago by liz.ingsimmons ▴ 140 • written 6.1 years ago by ferbecneu • 0

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1.5k

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interactionset granges

updated 6.6 years ago by Aaron Lun ★ 28k • written 6.6 years ago by Vinicius Henrique da Silva ▴ 40

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1.5k

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diffhic hic interactionset contactmatrix inflate

updated 7.2 years ago by Aaron Lun ★ 28k • written 7.2 years ago by hwick1 ▴ 20

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1.6k

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diffhic interactionset

8.5 years ago Vivek.b ▴ 100

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1.2k

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InteractionSet structural variants

updated 8.5 years ago by Aaron Lun ★ 28k • written 8.5 years ago by tangming2005 ▴ 200

12 results • Page 1 of 1

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Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Comment: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k

I think I explained what the differences between approach 1 and 2 is in my answer. I assume that the tutorial uses vst because it is varian…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

Thank you ATpoint for your responses. I am a bit confused because the difference between the two approaches is the selection of the genes…

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A: PDCD1 missing from TxDb.Hsapiens.UCSC.hg38.knownGene?

PDCD1 missing from TxDb.Hsapiens.UCSC.hg38.knownGene?

Bioconductor Course, Kenya 2025: Applications Open!

Comment: can't install tscR

Answer: Csaw normalization strategies - general inquiry

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