Showing : makecdfenv • reset
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gcrma error? - linked to makeProbePackage ?
cdf probe affy makecdfenv gcrma matchprobes cdf probe affy makecdfenv gcrma matchprobes
updated 17.8 years ago by 68k • written 17.8 years ago by ▴ 90
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8
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Clariom D Human Microarray CDF file to package
simpleaffy makecdfenv
8.6 years ago jayme.rickman • 0
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6
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1.4k
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mas5calls with make.cdf.env
cdf probe makecdfenv cdf probe makecdfenv
updated 17.9 years ago by 68k • written 17.9 years ago by ★ 1.3k
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5
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1.4k
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makecdfenv and multi-mapping probes on Mouse Gene 1.0 ST array
cdf probe makecdfenv cdf probe makecdfenv
updated 17.0 years ago by 21k • written 17.0 years ago by ★ 2.0k
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5
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Affymetrix Promoter tiling array
cdf makecdfenv cdf makecdfenv
18.7 years ago Wu, Xiwei ▴ 350
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5
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Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 18.5 years ago by ▴ 20 • written 18.5 years ago by ★ 2.2k
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affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 18.0 years ago by ★ 1.2k • written 18.0 years ago by ▴ 30
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4
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1.4k
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makecdfenv
cdf makecdfenv cdf makecdfenv
updated 18.4 years ago by 25k • written 18.4 years ago by ★ 13k
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4
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Help with microarray analysis (forming cdf files)
microarray affy makecdfenv
updated 10.0 years ago by 68k • written 10.0 years ago by ▴ 10
0
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4
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1.9k
views
error with makecdfenv package
Annotation cdf makecdfenv oligo xps Annotation cdf makecdfenv oligo xps
updated 10.8 years ago by ★ 3.9k • written 10.8 years ago by 68k
1
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4
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3.3k
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Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA Microarray cdf makecdfenv miRNA Microarray cdf makecdfenv
updated 11.3 years ago by 68k • written 11.3 years ago by ★ 13k
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3
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CDF package in R (windows)
cdf affy makecdfenv cdf affy makecdfenv
17.9 years ago Salim Charaniya ▴ 20
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3
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1.6k
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R crashes when using CDF package generated using makecdfenv
cdf makecdfenv cdf makecdfenv
updated 12.2 years ago by ★ 6.5k • written 12.2 years ago by ★ 13k
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3
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2.1k
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RE:proper pooling design
Microarray Normalization affy makecdfenv limma marray Microarray Normalization affy limma
updated 10 days ago by • 0 • written 21.3 years ago by ▴ 70
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3
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1.4k
views
INstalling devel version
Microarray Pharmacogenomics Annotation GO Cancer cdf probe affy makecdfenv limma annaffy
20.7 years ago Mayte Suarez-Farinas ▴ 300
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3
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2.0k
views
unable to install GenomeWideSNP_6 cdf
makecdfenv bioclite
updated 7.8 years ago by 68k • written 7.8 years ago by • 0
0
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3
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1.6k
views
Working flow_own CEL file reading problem
Normalization cdf affy makecdfenv Normalization cdf affy makecdfenv
updated 19.9 years ago by 68k • written 19.9 years ago by ▴ 40
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2
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1.3k
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Creating Affymetrix CDF files
cdf probe makecdfenv convert cdf probe makecdfenv convert
updated 16.3 years ago by ★ 6.5k • written 16.3 years ago by ▴ 20
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Using Affymetrix PM chips with Bioconductor
Annotation cdf probe makecdfenv Annotation cdf probe makecdfenv
updated 16.1 years ago by ★ 1.2k • written 16.1 years ago by ▴ 20
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2
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1.4k
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affy : ReadAffy() fails on HuGene-1_1-st-v1 chips
Microarray cdf affy makecdfenv PROcess oligo cycle Microarray cdf affy makecdfenv oligo
updated 13.2 years ago by 68k • written 13.2 years ago by ▴ 630
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2
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1.1k
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cdf environment for bovine Affy chips
cdf makecdfenv cdf makecdfenv
20.2 years ago Margaret Gardiner-Garden ▴ 160
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2
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1.2k
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makecdfenv error
cdf makecdfenv cdf makecdfenv
updated 20.0 years ago by 68k • written 20.0 years ago by ▴ 10
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2
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1.2k
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Missing probesets
cdf affy makecdfenv cdf affy makecdfenv
updated 20.0 years ago by ★ 5.5k • written 20.0 years ago by ▴ 110
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2
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2.8k
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Importing CDF file for custom array using makecdfenv
cdf affy makecdfenv cdf affy makecdfenv
updated 18.7 years ago by ▴ 120 • written 18.7 years ago by ▴ 340
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2
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1.3k
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how to make probe environments for use with GCRMA
cdf makecdfenv gcrma cdf makecdfenv gcrma
updated 17.8 years ago by ▴ 50 • written 17.8 years ago by ▴ 290
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2
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1.2k
views
makecdfenv crashes
cdf affy makecdfenv cdf affy makecdfenv
updated 16.4 years ago by 68k • written 16.4 years ago by ▴ 60
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2
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1.4k
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Creating Custom CDF
cdf makecdfenv cdf makecdfenv
updated 15.8 years ago by 68k • written 15.8 years ago by ▴ 40
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2
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1.3k
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Error message (probably) from AffyBatch.R when using a modified CDF
cdf affy makecdfenv cdf affy makecdfenv
updated 12.3 years ago by 68k • written 12.3 years ago by ▴ 50
0
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1
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1.2k
views
affymetrix CDF file problem
cdf makecdfenv cdf makecdfenv
updated 19.9 years ago by 68k • written 19.9 years ago by ▴ 80
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1
reply
814
views
makecdfenv makePlatformDesign bigendian
makecdfenv makePlatformDesign makecdfenv makePlatformDesign
updated 19.7 years ago by ★ 7.4k • written 19.7 years ago by ▴ 30
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1
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917
views
problems using cdfenv
zebrafish cdf makecdfenv simpleaffy zebrafish cdf makecdfenv simpleaffy
updated 20.5 years ago by 68k • written 20.5 years ago by ▴ 510
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1.3k
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making a cdf file for expression analysis on a tiling array
cdf affy makecdfenv cdf affy makecdfenv
updated 18.2 years ago by 21k • written 18.2 years ago by ▴ 60
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959
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Selecting probe pairs for analysis
cdf probe makecdfenv cdf probe makecdfenv
updated 20.7 years ago by ▴ 950 • written 20.7 years ago by ▴ 60
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827
views
makecdfenv
makecdfenv makecdfenv
updated 20.8 years ago by 68k • written 20.8 years ago by ▴ 80
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1
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1.3k
views
How to create a custom CDF ?
mgu74av2 cdf probe affy makecdfenv gcrma mgu74av2 cdf probe affy makecdfenv gcrma
updated 20.8 years ago by ★ 1.1k • written 20.8 years ago by ▴ 10
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1
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1.0k
views
error in makecdfenv
makecdfenv makecdfenv
updated 17.6 years ago by 68k • written 17.6 years ago by ▴ 130
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1
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1.2k
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affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 17.6 years ago by ★ 1.2k • written 17.6 years ago by ★ 2.4k
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1
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861
views
makecdfenv not installed?
cdf makecdfenv cdf makecdfenv
updated 21.0 years ago by ★ 3.9k • written 21.0 years ago by ▴ 10
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1
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996
views
gcrma problem
cdf affy makecdfenv gcrma cdf affy makecdfenv gcrma
updated 16.7 years ago by 68k • written 16.7 years ago by ▴ 40
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1
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1.5k
views
Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics cdf affy makecdfenv plier affxparser preprocessCore Epigenetics cdf affy
updated 16.4 years ago by ▴ 140 • written 16.4 years ago by 68k
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1
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1.2k
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Small bug in function 'countskip.FASTA.entries' from package 'altcdfenvs'
probe affy makecdfenv matchprobes altcdfenvs probe affy makecdfenv matchprobes altcdfenvs
updated 19.4 years ago by ▴ 950 • written 19.5 years ago by ▴ 190
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1
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1.2k
views
problem in make.cdf.package of MoGene-1_0-st-v1.r3.CDF
cdf makecdfenv cdf makecdfenv
updated 15.6 years ago by ★ 4.3k • written 15.6 years ago by ▴ 950
2
votes
1
reply
358
views
Using Affymetrix Custom Array
ArrayExpress makecdfenv AffymetrixChip gcrma GeneExpression
updated 5 months ago by 68k • written 5 months ago by • 0
0
votes
1
reply
850
views
Trouble installing 'makecdfenv'
makecdfenv makecdfenv
updated 21.3 years ago by ★ 5.5k • written 21.3 years ago by ▴ 20
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votes
1
reply
1.2k
views
solicitation for Affy bovine cdf environment
cdf affy makecdfenv cdf affy makecdfenv
updated 20.0 years ago by 68k • written 20.0 years ago by ▴ 10
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votes
1
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1.9k
views
Reading MAGE-ML cdf into bioconductor for limma in R v. 3.0.2
Microarray cdf probe makecdfenv RMAGEML ArrayExpress Microarray cdf probe makecdfenv
updated 11.1 years ago by 68k • written 11.1 years ago by ★ 13k
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1
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994
views
makecdfenv bug
GO makecdfenv GO makecdfenv
updated 20.0 years ago by ★ 7.4k • written 20.0 years ago by ▴ 140
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1
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1.0k
views
Fusarium CDF
cdf makecdfenv cdf makecdfenv
updated 19.0 years ago by 68k • written 19.0 years ago by ▴ 30
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1
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1.4k
views
Trouble in making the cdf package for Arabidopsis?
cdf probe makecdfenv cdf probe makecdfenv
updated 22.2 years ago by ▴ 640 • written 22.2 years ago by ▴ 20
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1
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1.2k
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new user trying to create a cdf package for custom array
cdf probe affy makecdfenv cdf probe affy makecdfenv
updated 18.7 years ago by 68k • written 18.7 years ago by ▴ 20
50 results • Page 1 of 1
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Replies
Comment: CluserProfiler message "No gene can be mapped" by Carolina • 0
There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…
Comment: Differing results with DESeq2 by JKim • 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Votes
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
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