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Showing :
maketxdbfromgff
•
reset
2
votes
2
replies
1.4k
views
Problem with MakeTxDbFromGFF
makeTxDbFromGff
23 months ago
stacy.genovese
• 0
3
votes
4
replies
3.5k
views
Saving and retrieving TxDB object
makeTxDBFromGFF
EISA
updated 4.5 years ago by
James W. MacDonald
68k • written 4.5 years ago by
nishanthemje
• 0
0
votes
0
replies
1.8k
views
error with makeTxDbFromGFF
genomicfeatures
gff
custom genome
makeTxDbFromGFF
makeTxDbFromGRanges
5.8 years ago
xvazquezc
• 0
0
votes
1
reply
1.4k
views
Error in .merge_transcript_parts(transcripts)
maketxdbfromgff
6.2 years ago
csijcs
• 0
0
votes
2
replies
2.6k
views
makeTxDbFromGFF errors too many NAs and make.splicings
maketxdbfromgff
limma
updated 6.3 years ago by
Hervé Pagès
16k • written 6.4 years ago by
Karl Lundén
▴ 20
0
votes
1
reply
1.7k
views
makeTxDbFromGFF error "stop codons that cannot be mapped to an exon"
genomicfeatures
txdb
maketxdbfromgff
updated 6.6 years ago by
daniel.vantwisk
▴ 50 • written 6.6 years ago by
marisa.e.miller
• 0
0
votes
0
replies
1.1k
views
Error using the makeTxDbFromGFF
maketxdbfromgff
7.0 years ago
bright602
• 0
0
votes
1
reply
4.3k
views
create a txdb using makeTxDbFromGFF
bioconductor
txdb
maketxdbfromgff
7.2 years ago
Nader.Aryamanesh
• 0
0
votes
3
replies
4.1k
views
makeTxDbFromGFF Error: subscript contains NAs
genomicfeatures
granges
maketxdbfromgff
updated 7.5 years ago by
Hervé Pagès
16k • written 7.6 years ago by
marc_bes
• 0
1
vote
2
replies
1.3k
views
Error while using GenomicFeatures package
genomicfeatures
maketxdbfromgff
updated 8.0 years ago by
Hervé Pagès
16k • written 8.0 years ago by
TFony
▴ 10
3
votes
2
replies
2.5k
views
makeTxDbFromGFF drops genes which have multiple chromosome locations. (with iGenome GTF)
genomicfeatures
gtf
maketxdbfromgff
iGenome
updated 8.3 years ago by
Martin Morgan
25k • written 8.3 years ago by
Marlin
▴ 20
1
vote
2
replies
1.6k
views
mRNA start used instead of gene start in makeTxDbFromGFF
maketxdbfromgff
genomicfeatures
updated 8.8 years ago by
Hervé Pagès
16k • written 8.8 years ago by
TimothéeFlutre
▴ 80
4
votes
2
replies
1.5k
views
distinguish DataSource from Provider and ProviderVersion in makeTxDbPackage
genomicfeatures
txdb
maketxdbfromgff
metadata
updated 8.8 years ago by
Valerie Obenchain
★ 6.8k • written 8.8 years ago by
TimothéeFlutre
▴ 80
0
votes
5
replies
2.0k
views
makeTxDbFromGFF returns empty object
genomicfeatures
txdb
maketxdbfromgff
8.8 years ago
TimothéeFlutre
▴ 80
0
votes
0
replies
1.1k
views
Annotation missing when using makeTxDbFromGFF
makeTxDbFromGFF
9.0 years ago
Udi Landau
▴ 30
8
votes
7
replies
4.1k
views
Generating a proper TxDb instance from NCBI GFF Annotations File
ncbi
refseq
maketxdbfromgff
fetchExtendedChromInfoFromUCSC
genomeinfodb
updated 9.1 years ago by
Hervé Pagès
16k • written 9.1 years ago by
gokcen.eraslan
▴ 10
0
votes
7
replies
2.1k
views
Get wrong tx_type when using GenomicFeatures::makeTxDbFromGTF
genomicfeatures
maketxdbfromgff
tx_type
gtf
updated 9.2 years ago by
Hervé Pagès
16k • written 9.2 years ago by
Karolin Wiedemann
• 0
0
votes
0
replies
1.3k
views
Get wrong tx_type when using GenomicFeatures::makeTxDbFromGTF
genomicfeatures
maketxdbfromgff
tx_type
gtf
9.2 years ago
Karolin Wiedemann
• 0
0
votes
4
replies
2.2k
views
MakeTxDbFromGFF creates empty object
maketxdbfromgff
updated 9.2 years ago by
Hervé Pagès
16k • written 9.2 years ago by
rebecca.halbach
• 0
0
votes
7
replies
2.6k
views
makeTxDbFromGFF yields an empty TxDb
annotation
maketxdbfromgff
genomicfeatures
9.3 years ago
José Luis Lavín
▴ 10
0
votes
2
replies
2.5k
views
makeTxDbpackage after makeTxDbfromGFF --> Error in spc[[2]] : subscript out of bounds
gtf
TxDb
maketxdbfromgff
updated 9.6 years ago by
Hervé Pagès
16k • written 9.6 years ago by
yacine.badis
• 0
0
votes
2
replies
2.3k
views
makeTxDbFromGFF not capturing/displaying 'gene' records from GFF3 file.
genomicfeatures
makeTxDbFromGFF
updated 9.8 years ago by
Hervé Pagès
16k • written 9.8 years ago by
pterry
• 0
22 results • Page
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Comment: Web accessibility of Bioconductor.org
by
Sean Davis
21k
Added issue to website github repo: https://github.com/Bioconductor/bioconductor.org/issues/304
Comment: Web accessibility of Bioconductor.org
by
Vincent J. Carey, Jr.
6.7k
I watched https://www.youtube.com/watch?v=npto50RJpDc and that shows some principles that are not followed in the markup for the tables at …
Comment: Web accessibility of Bioconductor.org
by
Vincent J. Carey, Jr.
6.7k
I second the thanks for this post. I just tried the screen reader with macOS and see that the handling of our package tables is poor. How…
Comment: Web accessibility of Bioconductor.org
by
Michael Love
43k
hello. Thanks for your post, I'll post this also to the biocwebsite channel on the Bioconductor community slack. https://community-bioc.sl…
Answer: KEGG GSEA using Clusterprofiler - ncbi-geneid missing?
by
Jessica
• 0
Nevermind. Just had to change to Uniprot IDs and it worked :)
Votes
Store Matrix in DataFrame Cell
A: how to extract Granges not overlapping with other ganges?
DESeq2 1.20.0 lfcshrink function
A: LIMMA on RT-PCR data
Answer: Efficiently working with HDF5-backed SingleCellExperiments
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