Showing : maketxdbfromgff • reset
2
votes
3
replies
2.0k
views
Problem with MakeTxDbFromGFF
makeTxDbFromGff
written 3.0 years ago by • 0
3
votes
4
replies
4.3k
views
Saving and retrieving TxDB object
makeTxDBFromGFF EISA
updated 5.6 years ago by 68k • written 5.6 years ago by • 0
0
votes
0
replies
2.1k
views
error with makeTxDbFromGFF
genomicfeatures gff custom genome makeTxDbFromGFF makeTxDbFromGRanges
6.9 years ago xvazquezc • 0
0
votes
1
reply
1.7k
views
Error in .merge_transcript_parts(transcripts)
maketxdbfromgff
7.3 years ago csijcs • 0
0
votes
2
replies
2.9k
views
makeTxDbFromGFF errors too many NAs and make.splicings
maketxdbfromgff limma
updated 7.4 years ago by 16k • written 7.4 years ago by ▴ 20
0
votes
1
reply
2.0k
views
makeTxDbFromGFF error "stop codons that cannot be mapped to an exon"
genomicfeatures txdb maketxdbfromgff
updated 7.6 years ago by ▴ 50 • written 7.7 years ago by ▴ 10
0
votes
0
replies
1.3k
views
Error using the makeTxDbFromGFF
maketxdbfromgff
8.1 years ago bright602 • 0
0
votes
1
reply
4.9k
views
create a txdb using makeTxDbFromGFF
bioconductor txdb maketxdbfromgff
8.2 years ago Nader.Aryamanesh • 0
0
votes
3
replies
4.7k
views
makeTxDbFromGFF Error: subscript contains NAs
genomicfeatures granges maketxdbfromgff
updated 8.5 years ago by 16k • written 8.6 years ago by • 0
1
vote
2
replies
1.5k
views
Error while using GenomicFeatures package
genomicfeatures maketxdbfromgff
updated 9.1 years ago by 16k • written 9.1 years ago by ▴ 10
3
votes
2
replies
2.9k
views
makeTxDbFromGFF drops genes which have multiple chromosome locations. (with iGenome GTF)
genomicfeatures gtf maketxdbfromgff iGenome
updated 9.3 years ago by 25k • written 9.3 years ago by ▴ 20
4
votes
2
replies
1.9k
views
distinguish DataSource from Provider and ProviderVersion in makeTxDbPackage
genomicfeatures txdb maketxdbfromgff metadata
updated 9.8 years ago by ★ 6.8k • written 9.9 years ago by ▴ 80
1
vote
2
replies
1.8k
views
mRNA start used instead of gene start in makeTxDbFromGFF
maketxdbfromgff genomicfeatures
updated 9.8 years ago by 16k • written 9.9 years ago by ▴ 80
0
votes
5
replies
2.4k
views
makeTxDbFromGFF returns empty object
genomicfeatures txdb maketxdbfromgff
9.9 years ago TimothéeFlutre ▴ 80
0
votes
0
replies
1.3k
views
Annotation missing when using makeTxDbFromGFF
makeTxDbFromGFF
10.0 years ago Udi Landau ▴ 30
8
votes
7
replies
4.9k
views
Generating a proper TxDb instance from NCBI GFF Annotations File
ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb
updated 10.1 years ago by 16k • written 10.1 years ago by ▴ 10
0
votes
0
replies
1.5k
views
Get wrong tx_type when using GenomicFeatures::makeTxDbFromGTF
genomicfeatures maketxdbfromgff tx_type gtf
10.3 years ago Karolin Wiedemann • 0
0
votes
7
replies
2.6k
views
Get wrong tx_type when using GenomicFeatures::makeTxDbFromGTF
genomicfeatures maketxdbfromgff tx_type gtf
updated 10.3 years ago by 16k • written 10.3 years ago by • 0
0
votes
4
replies
2.6k
views
MakeTxDbFromGFF creates empty object
maketxdbfromgff
updated 10.3 years ago by 16k • written 10.3 years ago by • 0
0
votes
7
replies
3.1k
views
makeTxDbFromGFF yields an empty TxDb
annotation maketxdbfromgff genomicfeatures
10.4 years ago José Luis Lavín ▴ 10
0
votes
2
replies
2.8k
views
makeTxDbpackage after makeTxDbfromGFF --> Error in spc[[2]] : subscript out of bounds
gtf TxDb maketxdbfromgff
updated 10.7 years ago by 16k • written 10.7 years ago by • 0
0
votes
2
replies
2.6k
views
makeTxDbFromGFF not capturing/displaying 'gene' records from GFF3 file.
genomicfeatures makeTxDbFromGFF
updated 10.8 years ago by 16k • written 10.9 years ago by • 0
22 results • Page 1 of 1
Recent ...
Replies
Comment: Inclusion of non-coding portions of transcripts (UTR-regions and introns) within by Pat • 0
Ill be honest, I didnt trust any of these services for a long time. Im a political science major and the pressure around writing is intense…
Comment: Question on processing compound protein groups in limpa by brianpeterson1210 • 0
Thank you[,][1] Appreciated! [1]: http://paint3d.org
Comment: Subsetting DDS object for individual conditions over time by A ▴ 60
Hi @atpoint Thank you for the quick reply! and this makes sense! I will confirm with a corr to see how the SFs differ but also how DE dif…
Answer: Subsetting DDS object for individual conditions over time by ATpoint ★ 5.0k
It would surprise my quite a bit if the size factors would differ notably between subset or not. I would always try to keep the size factor…
Comment: GSEA error by Adithi • 0
Thank you so much. That makes perfect sense to me. I will work on this.
Votes
Comment: Question about using LRT test for time course experiments with DESeq2
A: DESeq2 LRT test for multi-factor designs
Answer: RNA Seq using Lrt
Answer: DESeq2 LRT Reduced Formula
Answer: DESeq2: LRT or WALD guidance
Awards • All
Teacher to ATpoint ★ 5.0k
Teacher to Michael Love 43k
Popular Question to A ▴ 60
Popular Question to Aichatou • 0
Popular Question to boczniak767 ▴ 740
Locations • All
United States, 6 minutes ago
United States, 33 minutes ago
Argentina, 59 minutes ago
Chile, 1 hour ago
Barcelona, Spain, 2 hours ago
Traffic: 2200 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6