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News: Ensembl 113 has been released
ensembl ensembldb mart biomaRt
9 weeks ago Ensembl_Jorge • 0
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1.5k
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Accessing local installation of biomart results in "Unexpected format to the list of available marts"
mart martconfigurator biomaRt xml
updated 4.0 years ago by ★ 6.6k • written 4.0 years ago by • 0
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News: Ensembl 100 has been released
biomart ensembl e100 mart news News
4.6 years ago Thomas Maurel ▴ 800
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2
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2.4k
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Error in martCheck(mart, c("ensembl", "ENSEMBL_MART_ENSEMBL")) : No dataset selected, please select a dataset first.
biomart mart ensembl
updated 4.7 years ago by 67k • written 4.7 years ago by • 0
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926
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News: Ensembl 99 has been released and renaming of species
biomart ensembl e99 mart news News
4.9 years ago Thomas Maurel ▴ 800
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1.1k
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News: Ensembl 98 has been released and renaming of species
biomart ensembl e98 mart News
5.2 years ago Thomas Maurel ▴ 800
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4
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1.3k
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retrieve vgnc gene name or vgnc gene symbol from Biomart after differential analysis
biomart mart getbm
updated 6.4 years ago by 67k • written 6.4 years ago by ▴ 20
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0
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News: Ensembl release 85 is out!
ensembl biomart release85 ensembl release mart News
8.4 years ago Thomas Maurel ▴ 800
4
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9
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3.4k
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News: Ensembl release 84 is out!
ensembl mart release84 biomart ensembl release News
updated 8.7 years ago by ▴ 20 • written 8.8 years ago by ▴ 800
9 results • Page 1 of 1
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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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