Showing : mast • reset
1
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2
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283
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Extracting genomic sequences using agat and bedtools yields different results
MAST
updated 6 weeks ago by ★ 4.1k • written 6 weeks ago by • 0
0
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0
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201
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Error: grouping factors must have > 1 sampled level
Mast mastR MAST
updated 8 weeks ago by 65k • written 8 weeks ago by • 0
0
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0
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168
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Comparing the effects of a condition over time in two seperate tissues
MAST
10 weeks ago Dillon • 0
0
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1
reply
292
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Mismatch between MAST DE results and expression dot plot
MAST mastR
3 months ago Simon • 0
0
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0
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432
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How to extract P-Values and LogFC from lrTest in MAST?
pvalue logFC lrtest MAST
12 months ago Tadeoye ▴ 20
1
vote
7
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1.3k
views
Likelihood ratio test (lrTest) in MAST comparing full to reduced model; and another question on controlling for CDR
MAST
14 months ago • updated 13 months ago Ken C • 0
0
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0
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403
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MAST for single cell ATAC data
MAST
14 months ago zuljiamel1991 ▴ 10
1
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2
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1.2k
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Input for MAST
MAST
14 months ago zuljiamel1991 ▴ 10
0
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0
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936
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How to interpret MAST coefficients
DifferentialExpression MAST
18 months ago Ismail • 0
0
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0
replies
476
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How does MAST caculate log fc
MAST
20 months ago Chenghao • 0
0
votes
0
replies
678
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Differential expression with single cell data: any good two component (hurdle) models recently?
SingleCellWorkflow DifferentialExpression SingleCell SingleCellMultiModal MAST
22 months ago Nik Tuzov ▴ 80
0
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0
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705
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Performing DGE analysis with MAST on a variable with more than 2 levels
MAST DEG SingleCell
24 months ago zroger499 • 0
0
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0
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879
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Low logFCs using MAST for scRNA-seq
MAST
2.1 years ago learner_MD • 0
0
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0
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734
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Issues geting meaninfull results for single cell DGE using MAST
MAST SingleCell
2.3 years ago zroger499 • 0
1
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0
replies
640
views
When I run `zlm` with several clusters, how to compare 1 cluster versus all the others?
MAST
2.7 years ago Dan • 0
0
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1
reply
933
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Differentially expressed genes across three different conditions
MAST SingleCell diffGeneAnalysis
updated 2.8 years ago by 65k • written 2.8 years ago by • 0
0
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1
reply
862
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MAST zlm shows warning: Coefficients ... are never estimible and will be dropped.
MAST
updated 2.9 years ago by • 0 • written 3.2 years ago by • 0
0
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0
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1.0k
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How to do pairwise multiple comparisons in MAST
MAST
3.2 years ago sysumed3615 • 0
0
votes
2
replies
1.1k
views
MAST compare two conditions with several donors
MAST
updated 3.2 years ago by • 0 • written 3.5 years ago by • 0
0
votes
3
replies
1.5k
views
MAST invalid Hypothesis, class objectORconnection error
R MAST scRNASeq
3.7 years ago TriS ▴ 200
1
vote
3
replies
1.2k
views
comparing 2 models with confounders with MAST (scRNA-seq DEA)
scRNA-seq MAST confounders
updated 4.3 years ago by ▴ 270 • written 4.3 years ago by ▴ 10
0
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1
reply
1.3k
views
About getting DE genes using MAST
MAST
updated 4.3 years ago by ▴ 270 • written 4.4 years ago by • 0
0
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0
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878
views
DEG among experimental and control group in MAST
MAST DEG batch effects
4.6 years ago chendianyu • 0
0
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1
reply
1.6k
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Minimum number of cells required for the MAST
MAST scRNAseq differential expression
4.7 years ago Andrew_McDavid ▴ 270
2
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3
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1.2k
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Logistic regression in MAST - question
mast
updated 5.1 years ago by ▴ 270 • written 5.1 years ago by ▴ 80
2
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7
replies
1.7k
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Estimation of non-trivial contrasts in MAST
mast
updated 5.1 years ago by ▴ 270 • written 5.2 years ago by ▴ 80
0
votes
1
reply
1.1k
views
How can I compute AIC for MAST hurdle model fitted in the whole dataset?
MAST AIC calcuation Parameters single cell hurdle model
updated 6 weeks ago by ▴ 20 • written 5.2 years ago by • 0
0
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2
replies
1.2k
views
Warning in bayes fit in MAST GSEA
MAST GSEA bayesglm.fit
5.7 years ago santos22903 • 0
0
votes
6
replies
1.4k
views
Error in zlm function model matrix
MAST
6.0 years ago jka8119 ▴ 10
2
votes
4
replies
1.8k
views
Interpretation of cngeneson when doing differential expression analysis in MAST
mast differential gene expression
updated 6.0 years ago by ▴ 270 • written 6.0 years ago by ▴ 40
2
votes
1
reply
2.3k
views
MAST: testing differential expression with a nested factorial design
MAST single-cell rna-seq
updated 6.0 years ago by ▴ 270 • written 6.1 years ago by ▴ 20
2
votes
1
reply
1.1k
views
How to load data csv in MAST
mast
6.0 years ago francesco.brundu@gmail.com ▴ 40
0
votes
4
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1.3k
views
MAST: What does the function gseaAfterBoot do exactly?
MAST
6.1 years ago dfm2129 • 0
0
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8
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1.8k
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MAST - not getting Hurdle p values
MAST
updated 6.2 years ago by ▴ 270 • written 6.2 years ago by ▴ 10
2
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3
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2.1k
views
Using MAST with DropSeq data
MAST mast dropseq
updated 6.2 years ago by ▴ 270 • written 6.2 years ago by ▴ 10
4
votes
3
replies
1.9k
views
single-cells RNA-seq analysis by MAST with unbalanced group size
mast single-cell rna-seq differential analysis
updated 6.3 years ago by ▴ 270 • written 6.3 years ago by ▴ 100
0
votes
2
replies
1.3k
views
What is the most useful distance measure to use for cell clustering based on MAST deviance residuals?
MAST
6.6 years ago alexanderaivazidis • 0
3
votes
3
replies
2.4k
views
How do you test a contrast in MAST?
MAST single-cell differential gene expression
updated 6.6 years ago by ▴ 270 • written 6.6 years ago by ▴ 40
4
votes
1
reply
1.8k
views
NAs in continuous coefficient and fold change in `zlm`
scrnaseq MAST differential gene expression
6.7 years ago Andrew_McDavid ▴ 270
2
votes
1
reply
4.2k
views
Intepretation of Z scores for gene set enrichment analysis in MAST
MAST scRNA GSEA
updated 6.8 years ago by ▴ 270 • written 6.8 years ago by • 0
0
votes
3
replies
1.4k
views
Modeling Dose-response data in MAST
MAST sc-rnaseq scrnaseq
updated 6.8 years ago by ▴ 270 • written 6.8 years ago by • 0
0
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1
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1.3k
views
Removal of batch effects before non-linear clustering for scRNAseq
scrnaseq MAST
7.0 years ago Andrew_McDavid ▴ 270
3
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2
replies
2.2k
views
MAST reported warning "Coefficients ... are never estimible and will be dropped."
mast sc-rnaseq
7.1 years ago shao ▴ 100
43 results • Page 1 of 1
Recent ...
Replies
Answer: DESeq2 v1.35.0 by Michael Love 41k
That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by James W. MacDonald 65k
Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.
Answer: DESeq2 v1.35.0 by James W. MacDonald 65k
Odd release versions indicate a devel version, which upon release is incremented to the next even version, so you won't be able to find tha…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by fatinataly • 0
I tried also with oligo does not work, any other suggestion?
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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