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metadata
•
reset
1
vote
2
replies
1.1k
views
Obtain metadata for software packages in Bioconductor
metadata
3.7 years ago
Donghui
▴ 10
2
votes
2
replies
1.6k
views
How to access metadata of GAlignments objects
rtracklayer
Rsamtools
GAlignments
GRanges
metadata
updated 4.7 years ago by
Hervé Pagès
16k • written 4.7 years ago by
Robert
▴ 10
2
votes
1
reply
1.6k
views
combining columns for experimental design in DESeq2
deseq2
design
metadata
updated 5.1 years ago by
sebastian.lobentanzer
▴ 50 • written 5.1 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
1.3k
views
Recount2 TCGA metadata missing sample, run and experiment columns
recount
metadata
tcga
updated 7.0 years ago by
rosabellascottgm
• 0 • written 7.0 years ago by
Mariela Cortés-López
• 0
2
votes
2
replies
1.7k
views
[VariantAnnotation] Preserve query metadata with locateVariants()
variantannotation
locatevariants
metadata
mcols
updated 7.2 years ago by
Valerie Obenchain
★ 6.8k • written 7.2 years ago by
enricoferrero
▴ 680
4
votes
3
replies
5.4k
views
What is the proper way to modify mcols of a GRanges inside a GRangesList?
granges
metadata
updated 7.7 years ago by
Michael Lawrence
★ 11k • written 7.7 years ago by
Ryan C. Thompson
★ 7.9k
0
votes
4
replies
1.4k
views
Data structure for my dataset
metadata
grangeslist
granges
sample
updated 7.8 years ago by
Michael Lawrence
★ 11k • written 7.8 years ago by
Sim1pall8a
• 0
1
vote
2
replies
2.3k
views
Subsetting GRanges based on metadata
GRanges
metadata
subsetting
updated 8.5 years ago by
Michael Lawrence
★ 11k • written 8.5 years ago by
mdeea123
▴ 10
3
votes
7
replies
2.2k
views
Group GRanges and keep metadata
granges
metadata
coursera
updated 8.7 years ago by
Michael Lawrence
★ 11k • written 8.7 years ago by
likeeatingpizza
▴ 10
4
votes
2
replies
1.5k
views
distinguish DataSource from Provider and ProviderVersion in makeTxDbPackage
genomicfeatures
txdb
maketxdbfromgff
metadata
updated 8.8 years ago by
Valerie Obenchain
★ 6.8k • written 8.8 years ago by
TimothéeFlutre
▴ 80
2
votes
3
replies
2.6k
views
Metadata Missing from vcf when reading in with readVcfAsVRanges
variantannotation
vranges
readvcf
readvcfasvranges
metadata
10.0 years ago
summerela
• 0
1
vote
3
replies
2.3k
views
Fast way to access metadata for GRangesList?
grangeslist
metadata
10.3 years ago
Robert K. Bradley
▴ 40
12 results • Page
1 of 1
Recent ...
Replies
Comment: WGCNA coupled with differential expression analysis: question about baseline mod
by
hetaf16210
• 0
@[slope][1] If feasible, consider conducting both analyses. Start with a pooled analysis to identify broad patterns, then conduct separate …
Comment: DESeq2 adujsted p-value cutoff seemingly not working
by
980linnet
• 0
Stuck on DESeq2 with alpha=.05 for padj cutoff. Can't seem to get the differential expression analysis to stick the landing - it's like try…
Comment: internal error in trio library when trying to use lfmm() in LEA package
by
PW
• 0
>ERROR: unable to open file D://anole_geno.snmf/K1/run1/anole_geno_r1.1.Q. Please, check that the name of the file you provided is correct.…
Comment: DESeq2 adujsted p-value cutoff seemingly not working
by
Guilherme
• 0
Thank you for your answer So the proper way to conduct the analysis is to put the filters in the results() function and later filter the da…
Comment: DiffBind - observation that the default union overlap is actually a gap of 1 bp
by
Ian D.
▴ 70
Please can you comment on this @rory.
Votes
A: how to extract Granges not overlapping with other ganges?
DESeq2 1.20.0 lfcshrink function
A: LIMMA on RT-PCR data
Answer: Efficiently working with HDF5-backed SingleCellExperiments
Efficiently working with HDF5-backed SingleCellExperiments
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