Bioconductor Metadata

Showing : metadata • reset

vote

replies

1.3k

views

metadata

4.5 years ago Donghui ▴ 10

votes

replies

1.9k

views

rtracklayer Rsamtools GAlignments GRanges metadata

updated 5.5 years ago by Hervé Pagès 16k • written 5.5 years ago by Robert ▴ 10

votes

1.9k

views

deseq2 design metadata

updated 5.9 years ago by sebastian.lobentanzer ▴ 60 • written 5.9 years ago by Assa Yeroslaviz ★ 1.5k

votes

replies

1.5k

views

recount metadata tcga

updated 7.8 years ago by rosabellascottgm • 0 • written 7.8 years ago by Mariela Cortés-López • 0

votes

replies

2.0k

views

variantannotation locatevariants metadata mcols

updated 8.0 years ago by Valerie Obenchain ★ 6.8k • written 8.0 years ago by enricoferrero ▴ 680

votes

replies

6.0k

views

granges metadata

updated 8.5 years ago by Michael Lawrence ★ 11k • written 8.5 years ago by Ryan C. Thompson ★ 7.9k

votes

replies

1.7k

views

metadata grangeslist granges sample

updated 8.6 years ago by Michael Lawrence ★ 11k • written 8.6 years ago by Sim1pall8a • 0

vote

replies

2.5k

views

GRanges metadata subsetting

updated 9.3 years ago by Michael Lawrence ★ 11k • written 9.3 years ago by mdeea123 ▴ 10

votes

replies

2.5k

views

granges metadata coursera

updated 9.5 years ago by Michael Lawrence ★ 11k • written 9.5 years ago by likeeatingpizza ▴ 10

votes

replies

1.8k

views

genomicfeatures txdb maketxdbfromgff metadata

updated 9.6 years ago by Valerie Obenchain ★ 6.8k • written 9.6 years ago by TimothéeFlutre ▴ 80

votes

replies

3.0k

views

variantannotation vranges readvcf readvcfasvranges metadata

10.8 years ago summerela • 0

vote

replies

2.5k

views

grangeslist metadata

11.1 years ago Robert K. Bradley ▴ 40

12 results • Page 1 of 1

Recent ...

Replies

Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Votes

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

Awards • All

Commentator to sina.nassiri ▴ 130