Bioconductor Metadata

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metadata

4.4 years ago • updated 4.3 years ago Donghui ▴ 10

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rtracklayer Rsamtools GAlignments GRanges metadata

updated 5.4 years ago by Hervé Pagès 16k • written 5.4 years ago by Robert ▴ 10

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deseq2 design metadata

updated 5.8 years ago by sebastian.lobentanzer ▴ 60 • written 5.8 years ago by Assa Yeroslaviz ★ 1.5k

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recount metadata tcga

updated 7.6 years ago by rosabellascottgm • 0 • written 7.6 years ago by Mariela Cortés-López • 0

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variantannotation locatevariants metadata mcols

updated 7.8 years ago by Valerie Obenchain ★ 6.8k • written 7.8 years ago by enricoferrero ▴ 680

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granges metadata

updated 8.4 years ago by Michael Lawrence ★ 11k • written 8.4 years ago by Ryan C. Thompson ★ 7.9k

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metadata grangeslist granges sample

updated 8.5 years ago by Michael Lawrence ★ 11k • written 8.5 years ago by Sim1pall8a • 0

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GRanges metadata subsetting

updated 9.2 years ago by Michael Lawrence ★ 11k • written 9.2 years ago by mdeea123 ▴ 10

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granges metadata coursera

updated 9.4 years ago by Michael Lawrence ★ 11k • written 9.4 years ago by likeeatingpizza ▴ 10

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genomicfeatures txdb maketxdbfromgff metadata

updated 9.5 years ago by Valerie Obenchain ★ 6.8k • written 9.5 years ago by TimothéeFlutre ▴ 80

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variantannotation vranges readvcf readvcfasvranges metadata

10.7 years ago summerela • 0

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grangeslist metadata

10.9 years ago Robert K. Bradley ▴ 40

12 results • Page 1 of 1

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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

Was anyone else able to put the pieces together using the reply above? I read in one 10X sample using DropletUtils::read10xCounts() and thi…

Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by dzv20413 • 0

Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…

Comment: Memory error while running alignments by Erik Wright ▴ 150

How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…

Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by Gabriel • 0

Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …

Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0

Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…

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Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Answer: DESeq2 design for haplotype MPRA

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Comment: Check removeBatchEffect effectiveness

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