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metadata
•
reset
1
vote
2
replies
1.1k
views
Obtain metadata for software packages in Bioconductor
metadata
3.8 years ago
Donghui
▴ 10
2
votes
2
replies
1.6k
views
How to access metadata of GAlignments objects
rtracklayer
Rsamtools
GAlignments
GRanges
metadata
updated 4.8 years ago by
Hervé Pagès
16k • written 4.8 years ago by
Robert
▴ 10
2
votes
1
reply
1.6k
views
combining columns for experimental design in DESeq2
deseq2
design
metadata
updated 5.2 years ago by
sebastian.lobentanzer
▴ 60 • written 5.2 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
1.3k
views
Recount2 TCGA metadata missing sample, run and experiment columns
recount
metadata
tcga
updated 7.0 years ago by
rosabellascottgm
• 0 • written 7.1 years ago by
Mariela Cortés-López
• 0
2
votes
2
replies
1.8k
views
[VariantAnnotation] Preserve query metadata with locateVariants()
variantannotation
locatevariants
metadata
mcols
updated 7.2 years ago by
Valerie Obenchain
★ 6.8k • written 7.3 years ago by
enricoferrero
▴ 680
4
votes
3
replies
5.5k
views
What is the proper way to modify mcols of a GRanges inside a GRangesList?
granges
metadata
updated 7.8 years ago by
Michael Lawrence
★ 11k • written 7.8 years ago by
Ryan C. Thompson
★ 7.9k
0
votes
4
replies
1.5k
views
Data structure for my dataset
metadata
grangeslist
granges
sample
updated 7.9 years ago by
Michael Lawrence
★ 11k • written 7.9 years ago by
Sim1pall8a
• 0
1
vote
2
replies
2.3k
views
Subsetting GRanges based on metadata
GRanges
metadata
subsetting
updated 8.6 years ago by
Michael Lawrence
★ 11k • written 8.6 years ago by
mdeea123
▴ 10
3
votes
7
replies
2.2k
views
Group GRanges and keep metadata
granges
metadata
coursera
updated 8.8 years ago by
Michael Lawrence
★ 11k • written 8.8 years ago by
likeeatingpizza
▴ 10
4
votes
2
replies
1.6k
views
distinguish DataSource from Provider and ProviderVersion in makeTxDbPackage
genomicfeatures
txdb
maketxdbfromgff
metadata
updated 8.9 years ago by
Valerie Obenchain
★ 6.8k • written 8.9 years ago by
TimothéeFlutre
▴ 80
2
votes
3
replies
2.7k
views
Metadata Missing from vcf when reading in with readVcfAsVRanges
variantannotation
vranges
readvcf
readvcfasvranges
metadata
10.1 years ago
summerela
• 0
1
vote
3
replies
2.3k
views
Fast way to access metadata for GRangesList?
grangeslist
metadata
10.4 years ago • updated 10.3 years ago
Robert K. Bradley
▴ 40
12 results • Page
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Answer: affy::rma results doesn't match with ncbi website
by
ATpoint
★ 4.7k
Exact OMCIS reproduction down to the values without code and software version is borderline impossible. Either use the values as provided o…
Answer: Use of org.Rn.eg.db with GRCr8 reference genome
by
James W. MacDonald
68k
You've got it backwards. It should be ``` adult_res_df$symbol <- mapIds(org.Rn.eg.db, keys = rownames(adult_res_df), column = "ENSEMBL"…
Comment: DESeq2 swap ensembl gene id rownames with gene symbol column
by
Erika
• 0
Alternatively, you could have added a column with the common gene names. Assuming your dataframe `df` was created using `DESeq()`, somethin…
Answer: Clarification on GOALL / GO2ALLORFs mapping
by
James W. MacDonald
68k
It appears that 'negative regulation of glycogen biosynthesis' has an 'is a' relationship with 'glycogen biosynthetic process' https://www.…
Comment: Can't post a question?
by
DavideSant
• 0
Thank you, this was super useful!
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Comment: Can't post a question?
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
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