Bioconductor Methylationarrayanalysis

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2.8k

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methylationArrayAnalysis

updated 9 months ago by olatunbosun.arowolo • 0 • written 18 months ago by shuangshuang • 0

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2.5k

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minfiDataEPIC methylationArrayAnalysis

updated 9 months ago by ATpoint ★ 4.1k • written 9 months ago by rae.alshammari ▴ 10

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2.4k

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MethylationArray methylationArrayAnalysis ChAMP

updated 6 months ago by dorota.komar • 0 • written 3.4 years ago by Ankit ▴ 20

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1.4k

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human methylationArrayAnalysis

updated 3 months ago by s.malik • 0 • written 14 months ago by jenniewoo ▴ 70

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1.0k

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champ.load epicarray ChAMP methylationArrayAnalysis

12 months ago arisarkar88 ▴ 40

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737

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MethylationArray methylationArrayAnalysis

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by henry-keen • 0

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674

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MethylationArrayData methylationArrayAnalysis

5 months ago aldea85 • 0

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642

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MethylationArrayData methylationArrayAnalysis

11 months ago • updated 10 months ago Irene • 0

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629

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BatchEffect limma methylationArrayAnalysis

updated 4 months ago by Gordon Smyth 50k • written 4 months ago by kyj2226 • 0

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586

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RRBSdata edgeR methylationArrayAnalysis

10 months ago Krzysztof • 0

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522

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MethylationArrayData methylationArrayAnalysis

updated 8 months ago by James W. MacDonald 65k • written 8 months ago by hayleyw • 0

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466

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DNAMethylation MethylationArray methylationArrayAnalysis illumina

12 weeks ago mikat • 0

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309

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DNAMethylation limma methylationArrayAnalysis

17 days ago • updated 11 days ago hortense96 • 0

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292

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MethylationArray methylationArrayAnalysis ChAMP

updated 10 weeks ago by James W. MacDonald 65k • written 10 weeks ago by david.cheishvili • 0

14 results • Page 1 of 1

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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

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Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

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