Bioconductor Methylkit

Showing : methylkit • reset

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157

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methylKit

updated 23 days ago by James W. MacDonald 67k • written 23 days ago by Satyanarayan • 0

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300

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methylKit

updated 3 months ago by alex.gos90 ▴ 10 • written 3 months ago by Krisztina • 0

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replies

755

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methylKit

updated 7 months ago by James W. MacDonald 67k • written 7 months ago by CHEN • 0

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312

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methylKit

7 months ago Modoc Kesner ▴ 10

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691

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methylKit

15 months ago Andrés • 0

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749

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methRead methylkit

23 months ago liulip • 0

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844

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methyl methylKit

2.6 years ago hasche • 0

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1.8k

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GenomicRanges methylKit S4Vectors

updated 2.6 years ago by James W. MacDonald 67k • written 2.6 years ago by hasche • 0

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1.4k

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methylkit

updated 3.1 years ago by alex.gos90 ▴ 10 • written 3.4 years ago by hasche • 0

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1.6k

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methylation methylKit bsseq

updated 3.1 years ago by alex.gos90 ▴ 10 • written 3.3 years ago by Arindam ▴ 80

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1.6k

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annotateWithGeneParts methylKit

3.1 years ago tanmayroy1979 ▴ 20

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1.4k

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methylkit normalizecoverage NA

updated 6.1 years ago by altuna akalin ▴ 20 • written 6.1 years ago by GFM ▴ 20

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1.4k

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R bioconductor methylation methylkit

updated 6.3 years ago by altuna akalin ▴ 20 • written 6.3 years ago by nilaycan • 0

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1.8k

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methylkit Tutorial

updated 7.0 years ago by Martin Morgan 25k • written 7.0 years ago by s1432985 • 0

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2.0k

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methylKit

updated 7.4 years ago by altuna akalin ▴ 20 • written 7.4 years ago by ch8316f5eyu • 0

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1.9k

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methylKit

7.4 years ago kamal.fartiyal84 ▴ 10

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1.8k

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methylKit bioconductor

updated 8.2 years ago by Martin Morgan 25k • written 8.2 years ago by tangming2005 ▴ 200

17 results • Page 1 of 1

Recent ...

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Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta by daniela.gutierrezandrade • 0

Hello, I am running into a similar issue. After setting the design, at the beginning of the analysis I filter rows with low counts. d…

Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by dseauer • 0

Thank you so much for all of your help! I really appreciate it!

Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by Gordon Smyth 51k

Thanks for extra info, but be careful that the Bioconductor support site requires code to be an markdown format. Copying code with prompts …

Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by dseauer • 0

Thank you so much for your reply! I am sincerely sorry- of course I do not have multiple GAL files- just one- I meant gpr files! I am so so…

Comment: Is it possible to parallelise saveHDF5SummarizedExperiment by Stefano Mangiola ▴ 20

Thansk Herve', I will try. For reference this is the parallelization implementation of zellkonverter, to save anndata from SCE https://gi…

Votes

A: Recommendations for combining multiple 10x runs into one SingleCellExperiment

Answer: Handling biological replicates in DESeq2

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore

biomaRt rnorvegicus_gene_ensembl not available anymore

A: Does edgeR need to specify reference group?

Awards • All

Commentator to James W. MacDonald 67k

Popular Question to Stefano Mangiola ▴ 20