Bioconductor Methylkit

Showing : methylkit • reset

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211

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methylKit

updated 8 weeks ago by James W. MacDonald 67k • written 8 weeks ago by Satyanarayan • 0

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337

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methylKit

updated 5 months ago by alex.gos90 ▴ 10 • written 5 months ago by Krisztina • 0

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858

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methylKit

updated 8 months ago by James W. MacDonald 67k • written 8 months ago by CHEN • 0

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340

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methylKit

8 months ago Modoc Kesner ▴ 10

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731

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methylKit

16 months ago Andrés • 0

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764

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methRead methylkit

2.0 years ago liulip • 0

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871

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methyl methylKit

2.7 years ago hasche • 0

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1.9k

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GenomicRanges methylKit S4Vectors

updated 2.7 years ago by James W. MacDonald 67k • written 2.8 years ago by hasche • 0

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1.5k

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methylkit

updated 3.2 years ago by alex.gos90 ▴ 10 • written 3.5 years ago by hasche • 0

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1.7k

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methylation methylKit bsseq

updated 3.2 years ago by alex.gos90 ▴ 10 • written 3.4 years ago by Arindam ▴ 80

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1.6k

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annotateWithGeneParts methylKit

3.2 years ago tanmayroy1979 ▴ 20

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1.4k

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methylkit normalizecoverage NA

updated 6.2 years ago by altuna akalin ▴ 20 • written 6.2 years ago by GFM ▴ 20

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1.4k

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R bioconductor methylation methylkit

updated 6.4 years ago by altuna akalin ▴ 20 • written 6.4 years ago by nilaycan • 0

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1.9k

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methylkit Tutorial

updated 7.1 years ago by Martin Morgan 25k • written 7.1 years ago by s1432985 • 0

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2.0k

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methylKit

updated 7.5 years ago by altuna akalin ▴ 20 • written 7.5 years ago by ch8316f5eyu • 0

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2.0k

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methylKit

7.5 years ago kamal.fartiyal84 ▴ 10

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1.8k

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methylKit bioconductor

updated 8.3 years ago by Martin Morgan 25k • written 8.3 years ago by tangming2005 ▴ 200

17 results • Page 1 of 1

Recent ...

Replies

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Hervé Pagès 16k

> I have requested gDNAx developers for a feature request to turn off seqlevelsStyle(txdb) Yes, that's the right course of action. `seqlev…

Comment: ISO a solution to rank-order introns by transcript by mat149 ▴ 80

Hey, In revisiting this question, the following code works for the '+' strand. I am having issues with demarcating intron rank by transcri…

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

Since the intra-block correlation is negative, it would be best to remove `block` from the model. My experience with genetically identical…

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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