Bioconductor Methylkit

Showing : methylkit • reset

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748

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methylKit

updated 14 months ago by James W. MacDonald 68k • written 14 months ago by Satyanarayan • 0

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695

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methylKit

updated 17 months ago by alex.gos90 ▴ 10 • written 17 months ago by Krisztina • 0

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1.6k

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methylKit

updated 20 months ago by James W. MacDonald 68k • written 20 months ago by CHEN • 0

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619

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methylKit

20 months ago Modoc Kesner ▴ 10

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methylKit

2.4 years ago Andrés • 0

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1.0k

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methRead methylkit

3.0 years ago liulip • 0

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1.1k

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methyl methylKit

3.7 years ago hasche • 0

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2.5k

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GenomicRanges methylKit S4Vectors

updated 3.7 years ago by James W. MacDonald 68k • written 3.7 years ago by hasche • 0

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1.8k

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methylkit

updated 4.2 years ago by alex.gos90 ▴ 10 • written 4.5 years ago by hasche • 0

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2.4k

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methylation methylKit bsseq

updated 4.2 years ago by alex.gos90 ▴ 10 • written 4.4 years ago by Arindam ▴ 80

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2.0k

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annotateWithGeneParts methylKit

4.2 years ago tanmayroy1979 ▴ 20

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1.8k

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methylkit normalizecoverage NA

updated 7.1 years ago by altuna akalin ▴ 20 • written 7.1 years ago by GFM ▴ 20

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1.8k

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R bioconductor methylation methylkit

updated 7.4 years ago by altuna akalin ▴ 20 • written 7.4 years ago by nilaycan • 0

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2.5k

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methylkit Tutorial

updated 8.0 years ago by Martin Morgan 25k • written 8.1 years ago by s1432985 • 0

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2.3k

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methylKit

updated 8.5 years ago by altuna akalin ▴ 20 • written 8.5 years ago by ch8316f5eyu • 0

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2.2k

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methylKit

8.5 years ago kamal.fartiyal84 ▴ 10

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2.1k

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methylKit bioconductor

updated 9.3 years ago by Martin Morgan 25k • written 9.3 years ago by tangming2005 ▴ 200

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Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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