Showing : methylKit • reset
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122
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MethylKit::calculateDiffMeth with two experimental factors
methylKit
6 weeks ago Andrés • 0
0
votes
1
reply
370
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[Methylkit]-Error in validObject(.Object) :
methRead methylkit
9 months ago liulip • 0
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0
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475
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Generating 5mCG or 5hmCG values per gene from BS/OXBS data
methyl methylKit
17 months ago hasche • 0
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6
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1.1k
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Error: duplicate row.names
GenomicRanges methylKit S4Vectors
updated 18 months ago by 63k • written 18 months ago by • 0
0
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1
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844
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Methread error Error in data[, 5] * data[, 6] : non-numeric argument to binary operator
methylkit
updated 23 months ago by ▴ 10 • written 2.3 years ago by • 0
0
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1
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707
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Gene level methylation values
methylation methylKit bsseq
updated 23 months ago by ▴ 10 • written 2.2 years ago by ▴ 80
2
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1
reply
738
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Not able to Annotate CpG Island using methylKit
annotateWithGeneParts methylKit
24 months ago tanmayroy1979 ▴ 20
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2
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952
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normalizecoverage in methylkit outputs NAs
methylkit normalizecoverage NA
updated 4.9 years ago by ▴ 20 • written 4.9 years ago by ▴ 20
0
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2
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932
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MethylKit DSS Package
R bioconductor methylation methylkit
updated 5.2 years ago by ▴ 20 • written 5.2 years ago by • 0
0
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3
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1.2k
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How to install MethylKit?
methylkit Tutorial
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
0
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2
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1.5k
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report error of methylkit
methylKit
updated 6.2 years ago by ▴ 20 • written 6.2 years ago by • 0
0
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2
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1.5k
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error reading bismark sam/bam files
methylKit
6.3 years ago kamal.fartiyal84 ▴ 10
0
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4
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1.4k
views
load methylKit segfault error
methylKit bioconductor
updated 7.1 years ago by 25k • written 7.1 years ago by ▴ 190
13 results • Page 1 of 1
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Answer: ukb Chromosomal position information was converted into SNPS by James W. MacDonald 63k
In my work, we almost always convert RSIDs to chr:pos because the former is ambiguous and changing whereas the latter is not. Which is like…
Comment: T.fit function of maSigPro returns error message by hanna.g • 0
Addition to the issue above: the T.fit function works only when choosing the step.method = "forward", for whatever reason. Maybe this clue …
Answer: Deseq2, enrichGO and ensembl ID by James W. MacDonald 63k
1. There isn't a keytype alternative. You need the gene IDs. 2. Convert the `rownames` of your 'se' object, or the `rownames` of your `D…
Comment: Doubts regarding Pathview by loyedbend2811 • 0
I thoroughly enjoyed reading your essay, and it was quite beneficial to me. Please join me in [monopoly online][1] if you have the time. …
Comment: ukb Chromosomal position information was converted into SNPS by wenbo • 0
Hi, I downloaded uk biobank data, but I don't know how to use R to convert chromosome position information to rs
Votes
Answer: MDS plot edgeR
A: legend with gradient in ComplexHeatmap
Comment: comparing contrasts in edger/lima using makeContrasts function
Answer: comparing contrasts in edger/lima using makeContrasts function
Answer: Differential expression analysis with only FPKM matrix available from total newb
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