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methylKit
•
reset
0
votes
0
replies
122
views
MethylKit::calculateDiffMeth with two experimental factors
methylKit
6 weeks ago
Andrés
• 0
0
votes
1
reply
370
views
[Methylkit]-Error in validObject(.Object) :
methRead
methylkit
9 months ago
liulip
• 0
0
votes
0
replies
475
views
Generating 5mCG or 5hmCG values per gene from BS/OXBS data
methyl
methylKit
17 months ago
hasche
• 0
0
votes
6
replies
1.1k
views
Error: duplicate row.names
GenomicRanges
methylKit
S4Vectors
updated 18 months ago by
James W. MacDonald
63k • written 18 months ago by
hasche
• 0
0
votes
1
reply
844
views
Methread error Error in data[, 5] * data[, 6] : non-numeric argument to binary operator
methylkit
updated 23 months ago by
alex.gos90
▴ 10 • written 2.3 years ago by
hasche
• 0
0
votes
1
reply
707
views
Gene level methylation values
methylation
methylKit
bsseq
updated 23 months ago by
alex.gos90
▴ 10 • written 2.2 years ago by
ag1805x
▴ 80
2
votes
1
reply
738
views
Not able to Annotate CpG Island using methylKit
annotateWithGeneParts
methylKit
24 months ago
tanmayroy1979
▴ 20
0
votes
2
replies
952
views
normalizecoverage in methylkit outputs NAs
methylkit
normalizecoverage
NA
updated 4.9 years ago by
altuna akalin
▴ 20 • written 4.9 years ago by
GFM
▴ 20
0
votes
2
replies
932
views
MethylKit DSS Package
R
bioconductor
methylation
methylkit
updated 5.2 years ago by
altuna akalin
▴ 20 • written 5.2 years ago by
nilaycan
• 0
0
votes
3
replies
1.2k
views
How to install MethylKit?
methylkit
Tutorial
updated 5.8 years ago by
Martin Morgan
25k • written 5.8 years ago by
s1432985
• 0
0
votes
2
replies
1.5k
views
report error of methylkit
methylKit
updated 6.2 years ago by
altuna akalin
▴ 20 • written 6.2 years ago by
ch8316f5eyu
• 0
0
votes
2
replies
1.5k
views
error reading bismark sam/bam files
methylKit
6.3 years ago
kamal.fartiyal84
▴ 10
0
votes
4
replies
1.4k
views
load methylKit segfault error
methylKit
bioconductor
updated 7.1 years ago by
Martin Morgan
25k • written 7.1 years ago by
tangming2005
▴ 190
13 results • Page
1 of 1
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Replies
Answer: ukb Chromosomal position information was converted into SNPS
by
James W. MacDonald
63k
In my work, we almost always convert RSIDs to chr:pos because the former is ambiguous and changing whereas the latter is not. Which is like…
Comment: T.fit function of maSigPro returns error message
by
hanna.g
• 0
Addition to the issue above: the T.fit function works only when choosing the step.method = "forward", for whatever reason. Maybe this clue …
Answer: Deseq2, enrichGO and ensembl ID
by
James W. MacDonald
63k
1. There isn't a keytype alternative. You need the gene IDs. 2. Convert the `rownames` of your 'se' object, or the `rownames` of your `D…
Comment: Doubts regarding Pathview
by
loyedbend2811
• 0
I thoroughly enjoyed reading your essay, and it was quite beneficial to me. Please join me in [monopoly online][1] if you have the time. …
Comment: ukb Chromosomal position information was converted into SNPS
by
wenbo
• 0
Hi, I downloaded uk biobank data, but I don't know how to use R to convert chromosome position information to rs
Votes
Answer: MDS plot edgeR
A: legend with gradient in ComplexHeatmap
Comment: comparing contrasts in edger/lima using makeContrasts function
Answer: comparing contrasts in edger/lima using makeContrasts function
Answer: Differential expression analysis with only FPKM matrix available from total newb
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Levi Waldron
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Ed Siefker
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James W. MacDonald
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