Bioconductor Methylkit

Showing : methylkit • reset

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methylKit

6.9 years ago kamal.fartiyal84 ▴ 10

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methylKit bioconductor

updated 7.7 years ago by Martin Morgan 25k • written 7.7 years ago by tangming2005 ▴ 190

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methylkit Tutorial

updated 6.4 years ago by Martin Morgan 25k • written 6.4 years ago by s1432985 • 0

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R bioconductor methylation methylkit

updated 5.8 years ago by altuna akalin ▴ 20 • written 5.8 years ago by nilaycan • 0

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1.2k

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methylkit normalizecoverage NA

updated 5.5 years ago by altuna akalin ▴ 20 • written 5.5 years ago by GFM ▴ 20

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methylkit

updated 2.5 years ago by alex.gos90 ▴ 10 • written 2.9 years ago by hasche • 0

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GenomicRanges methylKit S4Vectors

updated 2.1 years ago by James W. MacDonald 65k • written 2.1 years ago by hasche • 0

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1.1k

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methylation methylKit bsseq

updated 2.5 years ago by alex.gos90 ▴ 10 • written 2.8 years ago by ag1805x ▴ 80

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1.1k

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annotateWithGeneParts methylKit

2.6 years ago tanmayroy1979 ▴ 20

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205

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methylKit

updated 21 days ago by James W. MacDonald 65k • written 26 days ago by CHEN • 0

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1.7k

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methylKit

updated 6.8 years ago by altuna akalin ▴ 20 • written 6.8 years ago by ch8316f5eyu • 0

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646

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methyl methylKit

2.1 years ago hasche • 0

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582

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methRead methylkit

16 months ago liulip • 0

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118

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methylKit

22 days ago • updated 21 days ago Modoc Kesner ▴ 10

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434

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methylKit

8 months ago Andrés • 0

15 results • Page 1 of 1

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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 30

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Votes

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

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