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methylkit
•
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0
votes
1
reply
117
views
Granges regionCounts not returning the expected number of entries
methylKit
21 days ago • updated 20 days ago
Modoc Kesner
▴ 10
1
vote
2
replies
203
views
MethylKit read issue
methylKit
updated 20 days ago by
James W. MacDonald
65k • written 25 days ago by
CHEN
• 0
0
votes
0
replies
432
views
MethylKit::calculateDiffMeth with two experimental factors
methylKit
8 months ago
Andrés
• 0
0
votes
1
reply
582
views
[Methylkit]-Error in validObject(.Object) :
methRead
methylkit
16 months ago
liulip
• 0
0
votes
0
replies
646
views
Generating 5mCG or 5hmCG values per gene from BS/OXBS data
methyl
methylKit
2.1 years ago
hasche
• 0
0
votes
6
replies
1.5k
views
Error: duplicate row.names
GenomicRanges
methylKit
S4Vectors
updated 2.1 years ago by
James W. MacDonald
65k • written 2.1 years ago by
hasche
• 0
2
votes
1
reply
1.1k
views
Not able to Annotate CpG Island using methylKit
annotateWithGeneParts
methylKit
2.6 years ago
tanmayroy1979
▴ 20
0
votes
1
reply
1.1k
views
Gene level methylation values
methylation
methylKit
bsseq
updated 2.5 years ago by
alex.gos90
▴ 10 • written 2.8 years ago by
ag1805x
▴ 80
0
votes
1
reply
1.1k
views
Methread error Error in data[, 5] * data[, 6] : non-numeric argument to binary operator
methylkit
updated 2.5 years ago by
alex.gos90
▴ 10 • written 2.9 years ago by
hasche
• 0
0
votes
2
replies
1.2k
views
normalizecoverage in methylkit outputs NAs
methylkit
normalizecoverage
NA
updated 5.5 years ago by
altuna akalin
▴ 20 • written 5.5 years ago by
GFM
▴ 20
0
votes
2
replies
1.1k
views
MethylKit DSS Package
R
bioconductor
methylation
methylkit
updated 5.8 years ago by
altuna akalin
▴ 20 • written 5.8 years ago by
nilaycan
• 0
0
votes
3
replies
1.6k
views
How to install MethylKit?
methylkit
Tutorial
updated 6.4 years ago by
Martin Morgan
25k • written 6.4 years ago by
s1432985
• 0
0
votes
2
replies
1.7k
views
report error of methylkit
methylKit
updated 6.8 years ago by
altuna akalin
▴ 20 • written 6.8 years ago by
ch8316f5eyu
• 0
0
votes
2
replies
1.7k
views
error reading bismark sam/bam files
methylKit
6.9 years ago
kamal.fartiyal84
▴ 10
0
votes
4
replies
1.6k
views
load methylKit segfault error
methylKit
bioconductor
updated 7.7 years ago by
Martin Morgan
25k • written 7.7 years ago by
tangming2005
▴ 190
15 results • Page
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Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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