Bioconductor Minfidata

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DNA minfiData minfiDataEPIC DNAMethylation minfi

11 months ago user_bioinfo • 0

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815

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bumphunter minfiData minfi bumphun

updated 18 months ago by James W. MacDonald 68k • written 18 months ago by kumakeren16 • 0

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997

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minfiData minfi

updated 21 months ago by Basti ▴ 780 • written 21 months ago by clacarion • 0

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710

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methylclockData minfi methylclock minfidata

updated 23 months ago by James W. MacDonald 68k • written 23 months ago by sharangiiv • 0

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RnBeads minfiData minfi EPICarray

updated 2.7 years ago by Basti ▴ 780 • written 2.7 years ago by Jitendra ▴ 10

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

updated 2.9 years ago by James W. MacDonald 68k • written 2.9 years ago by Grace • 0

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

written 2.9 years ago by Grace • 0

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minfiData ChAMP

4.0 years ago behr201 • 0

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1.3k

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minfi minfiData MethylationArrayData

4.5 years ago ponche_de_kiwi • 0

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2.9k

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minfiData plotsex minfi minfiDataEPIC r

updated 4.9 years ago by suman • 0 • written 4.9 years ago by Bethan • 0

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2.5k

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minfi methylation dataimport minfidata missmethyl

updated 7.3 years ago by James W. MacDonald 68k • written 7.4 years ago by moldach ▴ 20

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1.9k

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minfi minfidata rgl. mac os x el capitan

updated 9.7 years ago by Kasper Daniel Hansen ★ 6.5k • written 9.7 years ago by holbrookjoanna • 0

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2.7k

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minfidata minfi illuminahumanmethylation450k.db illuminahumanmethylation450kanno.ilmn12.hg19

10.8 years ago alejandretheodore • 0

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2.4k

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minfi minfidata illumina methylation dmpfinder

updated 11.4 years ago by James W. MacDonald 68k • written 11.4 years ago by michael.zulyniak • 0

14 results • Page 1 of 1

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Answer: Bile acid analysis with limpa by Gordon Smyth 53k

I am not familiar with targeted HPLC-MS and I don't know what you mean by "peak areas". If it produces standard mass spec data, then limpa …

Comment: How to convert .raw data for use in xcms by TikTsossa33ssalpc • 0

It sounds like your mzML conversion has a CV term that XCMS doesn t recognize, which often happens with newer vendor formats or outdated ms…

Comment: Boolean Gate Combination for Any 2 Positive Events in flowWorkspace by TikTsossa33ssalpc • 0

To calculate event numbers for boolean combinations in flow cytometry, you should use a logic gating tool or a script that processes popula…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Confirming my understanding after executing the code provided: this is similar to a design formula of `~0+mouse+group+group:allele`, except…

Comment: Combining two proteomics datasets with limpa by Andrew Pattison • 0

Thanks heaps Gordon. I went with option 1 and no normalisation and all seems to have worked well. Cheers, Andrew

Votes

A: DESeq2: Is it possible to convert read counts to expression values via TPM and r

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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