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minfidata
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normalizatino of dna methylation EPIC data
DNA
minfiData
minfiDataEPIC
DNAMethylation
minfi
11 months ago
user_bioinfo
• 0
0
votes
1
reply
823
views
minfi - bumphunter value problem
bumphunter
minfiData
minfi
bumphun
updated 18 months ago by
James W. MacDonald
68k • written 19 months ago by
kumakeren16
• 0
1
vote
4
replies
1.0k
views
minfi::read.metharray.exp
minfiData
minfi
updated 21 months ago by
Basti
▴ 780 • written 21 months ago by
clacarion
• 0
0
votes
1
reply
716
views
Matrix multiplication error to estimate telomere length
methylclockData
minfi
methylclock
minfidata
updated 23 months ago by
James W. MacDonald
68k • written 23 months ago by
sharangiiv
• 0
0
votes
3
replies
1.9k
views
Batch correction using control probes in EPIC array data
RnBeads
minfiData
minfi
EPICarray
updated 2.7 years ago by
Basti
▴ 780 • written 2.7 years ago by
Jitendra
▴ 10
0
votes
4
replies
2.1k
views
Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis
minfiData
minfi
MethylationArrayData
MethylationArray
updated 2.9 years ago by
James W. MacDonald
68k • written 2.9 years ago by
Grace
• 0
0
votes
5
replies
2.4k
views
minfi error read.metharray.exp
methylationArrayAnalysis
minfiData
minfi
MethylationArrayData
MethylationArray
written 2.9 years ago by
Grace
• 0
0
votes
0
replies
1.4k
views
Error in champ.svd - function 'EstDimRMTv2' within champ.svd acting inconsistently?
minfiData
ChAMP
4.1 years ago
behr201
• 0
0
votes
0
replies
1.3k
views
minfi - estimateCellCounts2-proportions sum more than 1
minfi
minfiData
MethylationArrayData
4.5 years ago
ponche_de_kiwi
• 0
1
vote
1
reply
2.9k
views
plotSex error message
minfiData
plotsex
minfi
minfiDataEPIC
r
updated 4.9 years ago by
suman
• 0 • written 4.9 years ago by
Bethan
• 0
1
vote
2
replies
2.5k
views
Minfi read.metharray.sheet error
minfi
methylation
dataimport
minfidata
missmethyl
updated 7.4 years ago by
James W. MacDonald
68k • written 7.4 years ago by
moldach
▴ 20
0
votes
1
reply
1.9k
views
Problem loading minfi on macOS
minfi
minfidata
rgl.
mac os x
el capitan
updated 9.8 years ago by
Kasper Daniel Hansen
★ 6.5k • written 9.8 years ago by
holbrookjoanna
• 0
0
votes
1
reply
2.7k
views
Analyzing 450k Methylation from TCGA Website
minfidata
minfi
illuminahumanmethylation450k.db
illuminahumanmethylation450kanno.ilmn12.hg19
10.8 years ago
alejandretheodore
• 0
0
votes
2
replies
2.4k
views
Help resovling"Error in lm.fit" with 'dmpFinder' function in minfi
minfi
minfidata
illumina
methylation
dmpfinder
updated 11.4 years ago by
James W. MacDonald
68k • written 11.4 years ago by
michael.zulyniak
• 0
14 results • Page
1 of 1
Recent ...
Replies
Comment: Error message that there is no package called Biobase
by
DamionLedner99
• 0
thanks for sharing!!! https://cran.r-project.org/
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC
by
Ben
• 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis
by
James W. MacDonald
68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
varying.mastodon.isyn
• 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency)
by
Marina
• 0
Thank you!
Votes
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
Answer: Confused about the CPM and TMM normalization in edgeR
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