Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
minfidata
•
reset
1
vote
2
replies
776
views
normalizatino of dna methylation EPIC data
DNA
minfiData
minfiDataEPIC
DNAMethylation
minfi
8 months ago
user_bioinfo
• 0
0
votes
1
reply
726
views
minfi - bumphunter value problem
bumphunter
minfiData
minfi
bumphun
updated 15 months ago by
James W. MacDonald
68k • written 15 months ago by
kumakeren16
• 0
1
vote
4
replies
864
views
minfi::read.metharray.exp
minfiData
minfi
updated 18 months ago by
Basti
▴ 780 • written 18 months ago by
clacarion
• 0
0
votes
1
reply
648
views
Matrix multiplication error to estimate telomere length
methylclockData
minfi
methylclock
minfidata
updated 20 months ago by
James W. MacDonald
68k • written 20 months ago by
sharangiiv
• 0
0
votes
3
replies
1.8k
views
Batch correction using control probes in EPIC array data
RnBeads
minfiData
minfi
EPICarray
updated 2.4 years ago by
Basti
▴ 780 • written 2.4 years ago by
Jitendra
▴ 10
0
votes
4
replies
1.9k
views
Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis
minfiData
minfi
MethylationArrayData
MethylationArray
updated 2.6 years ago by
James W. MacDonald
68k • written 2.6 years ago by
Grace
• 0
0
votes
5
replies
2.3k
views
minfi error read.metharray.exp
methylationArrayAnalysis
minfiData
minfi
MethylationArrayData
MethylationArray
written 2.6 years ago by
Grace
• 0
0
votes
0
replies
1.3k
views
Error in champ.svd - function 'EstDimRMTv2' within champ.svd acting inconsistently?
minfiData
ChAMP
3.8 years ago
behr201
• 0
0
votes
0
replies
1.2k
views
minfi - estimateCellCounts2-proportions sum more than 1
minfi
minfiData
MethylationArrayData
4.2 years ago
ponche_de_kiwi
• 0
1
vote
1
reply
2.8k
views
plotSex error message
minfiData
plotsex
minfi
minfiDataEPIC
r
updated 4.7 years ago by
suman
• 0 • written 4.7 years ago by
Bethan
• 0
1
vote
2
replies
2.5k
views
Minfi read.metharray.sheet error
minfi
methylation
dataimport
minfidata
missmethyl
updated 7.1 years ago by
James W. MacDonald
68k • written 7.1 years ago by
moldach
▴ 20
0
votes
1
reply
1.8k
views
Problem loading minfi on macOS
minfi
minfidata
rgl.
mac os x
el capitan
updated 9.5 years ago by
Kasper Daniel Hansen
★ 6.5k • written 9.5 years ago by
holbrookjoanna
• 0
0
votes
1
reply
2.6k
views
Analyzing 450k Methylation from TCGA Website
minfidata
minfi
illuminahumanmethylation450k.db
illuminahumanmethylation450kanno.ilmn12.hg19
10.5 years ago
alejandretheodore
• 0
0
votes
2
replies
2.4k
views
Help resovling"Error in lm.fit" with 'dmpFinder' function in minfi
minfi
minfidata
illumina
methylation
dmpfinder
updated 11.1 years ago by
James W. MacDonald
68k • written 11.1 years ago by
michael.zulyniak
• 0
14 results • Page
1 of 1
Recent ...
Replies
Answer: Using DESeq2 for age prediction
by
ATpoint
★ 5.0k
The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…
Comment: DESeq2 for candidate gene analysis
by
piffelpaff
▴ 20
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis
by
Michael Love
43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
Votes
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
Awards
• All
Popular Question
to
Gordon Smyth
53k
Popular Question
to
Matej
• 0
Popular Question
to
Hervé Pagès
16k
Popular Question
to
Josef Frank
• 0
Popular Question
to
dan.gatti
• 0
Locations
• All
United States,
1 hour ago
United States,
1 hour ago
United States,
1 hour ago
Germany,
1 hour ago
United States,
2 hours ago
Traffic: 656 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6