Bioconductor Minfidata

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DNA minfiData minfiDataEPIC DNAMethylation minfi

9 months ago user_bioinfo • 0

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762

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bumphunter minfiData minfi bumphun

updated 17 months ago by James W. MacDonald 68k • written 17 months ago by kumakeren16 • 0

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942

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minfiData minfi

updated 19 months ago by Basti ▴ 780 • written 19 months ago by clacarion • 0

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680

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methylclockData minfi methylclock minfidata

updated 21 months ago by James W. MacDonald 68k • written 21 months ago by sharangiiv • 0

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1.8k

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RnBeads minfiData minfi EPICarray

updated 2.6 years ago by Basti ▴ 780 • written 2.6 years ago by Jitendra ▴ 10

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2.0k

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

updated 2.8 years ago by James W. MacDonald 68k • written 2.8 years ago by Grace • 0

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2.3k

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

written 2.8 years ago by Grace • 0

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1.3k

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minfiData ChAMP

3.9 years ago behr201 • 0

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1.2k

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minfi minfiData MethylationArrayData

4.3 years ago ponche_de_kiwi • 0

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2.9k

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minfiData plotsex minfi minfiDataEPIC r

updated 4.8 years ago by suman • 0 • written 4.8 years ago by Bethan • 0

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2.5k

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minfi methylation dataimport minfidata missmethyl

updated 7.2 years ago by James W. MacDonald 68k • written 7.2 years ago by moldach ▴ 20

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1.9k

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minfi minfidata rgl. mac os x el capitan

updated 9.6 years ago by Kasper Daniel Hansen ★ 6.5k • written 9.6 years ago by holbrookjoanna • 0

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minfidata minfi illuminahumanmethylation450k.db illuminahumanmethylation450kanno.ilmn12.hg19

10.7 years ago alejandretheodore • 0

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2.4k

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minfi minfidata illumina methylation dmpfinder

updated 11.2 years ago by James W. MacDonald 68k • written 11.2 years ago by michael.zulyniak • 0

14 results • Page 1 of 1

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Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Answer: PTM analysis in LIMPA by Gordon Smyth 53k

For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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