Bioconductor Minfidata

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DNA minfiData minfiDataEPIC DNAMethylation minfi

8 months ago user_bioinfo • 0

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726

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bumphunter minfiData minfi bumphun

updated 15 months ago by James W. MacDonald 68k • written 15 months ago by kumakeren16 • 0

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864

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minfiData minfi

updated 18 months ago by Basti ▴ 780 • written 18 months ago by clacarion • 0

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methylclockData minfi methylclock minfidata

updated 20 months ago by James W. MacDonald 68k • written 20 months ago by sharangiiv • 0

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RnBeads minfiData minfi EPICarray

updated 2.4 years ago by Basti ▴ 780 • written 2.4 years ago by Jitendra ▴ 10

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1.9k

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

updated 2.6 years ago by James W. MacDonald 68k • written 2.6 years ago by Grace • 0

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

written 2.6 years ago by Grace • 0

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minfiData ChAMP

3.8 years ago behr201 • 0

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minfi minfiData MethylationArrayData

4.2 years ago ponche_de_kiwi • 0

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minfiData plotsex minfi minfiDataEPIC r

updated 4.7 years ago by suman • 0 • written 4.7 years ago by Bethan • 0

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2.5k

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minfi methylation dataimport minfidata missmethyl

updated 7.1 years ago by James W. MacDonald 68k • written 7.1 years ago by moldach ▴ 20

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1.8k

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minfi minfidata rgl. mac os x el capitan

updated 9.5 years ago by Kasper Daniel Hansen ★ 6.5k • written 9.5 years ago by holbrookjoanna • 0

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2.6k

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minfidata minfi illuminahumanmethylation450k.db illuminahumanmethylation450kanno.ilmn12.hg19

10.5 years ago alejandretheodore • 0

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2.4k

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minfi minfidata illumina methylation dmpfinder

updated 11.1 years ago by James W. MacDonald 68k • written 11.1 years ago by michael.zulyniak • 0

14 results • Page 1 of 1

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Answer: Using DESeq2 for age prediction by ATpoint ★ 5.0k

The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…

Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20

thank you so much for answering Dr. Love!

Answer: DESeq2 for candidate gene analysis by Michael Love 43k

Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…

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A: Multi-level experiments in Limma

Answer: Should voomWithQualityWeights still be used when the sample-specific weights var

Answer: DESeq2 for candidate gene analysis

DESeq2 for candidate gene analysis

Answer: DESeq2 for candidate gene analysis

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