Bioconductor Minfidata

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DNA minfiData minfiDataEPIC DNAMethylation minfi

11 months ago user_bioinfo • 0

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823

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bumphunter minfiData minfi bumphun

updated 18 months ago by James W. MacDonald 68k • written 19 months ago by kumakeren16 • 0

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minfiData minfi

updated 21 months ago by Basti ▴ 780 • written 21 months ago by clacarion • 0

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716

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methylclockData minfi methylclock minfidata

updated 23 months ago by James W. MacDonald 68k • written 23 months ago by sharangiiv • 0

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1.9k

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RnBeads minfiData minfi EPICarray

updated 2.7 years ago by Basti ▴ 780 • written 2.7 years ago by Jitendra ▴ 10

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

updated 2.9 years ago by James W. MacDonald 68k • written 2.9 years ago by Grace • 0

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

written 2.9 years ago by Grace • 0

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1.4k

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minfiData ChAMP

4.1 years ago behr201 • 0

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1.3k

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minfi minfiData MethylationArrayData

4.5 years ago ponche_de_kiwi • 0

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2.9k

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minfiData plotsex minfi minfiDataEPIC r

updated 4.9 years ago by suman • 0 • written 4.9 years ago by Bethan • 0

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2.5k

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minfi methylation dataimport minfidata missmethyl

updated 7.4 years ago by James W. MacDonald 68k • written 7.4 years ago by moldach ▴ 20

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1.9k

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minfi minfidata rgl. mac os x el capitan

updated 9.8 years ago by Kasper Daniel Hansen ★ 6.5k • written 9.8 years ago by holbrookjoanna • 0

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minfidata minfi illuminahumanmethylation450k.db illuminahumanmethylation450kanno.ilmn12.hg19

10.8 years ago alejandretheodore • 0

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2.4k

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minfi minfidata illumina methylation dmpfinder

updated 11.4 years ago by James W. MacDonald 68k • written 11.4 years ago by michael.zulyniak • 0

14 results • Page 1 of 1

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Comment: Error message that there is no package called Biobase by DamionLedner99 • 0

thanks for sharing!!! https://cran.r-project.org/

Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0

Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…

Answer: DESeq2 for 16S rRNA Analysis by James W. MacDonald 68k

The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …

Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0

Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …

Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0

Thank you!

Votes

Comment: Are transformed values from rlog /vst log2 normalized counts?

Answer: Are transformed values from rlog /vst log2 normalized counts?

A: DESeq2 normalization vs VST vs rlog

Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline

Answer: Confused about the CPM and TMM normalization in edgeR

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Teacher to Michael Love 43k

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