Bioconductor Minfidata

Showing : minfidata • reset

vote

replies

800

views

DNA minfiData minfiDataEPIC DNAMethylation minfi

8 months ago user_bioinfo • 0

votes

745

views

bumphunter minfiData minfi bumphun

updated 16 months ago by James W. MacDonald 68k • written 16 months ago by kumakeren16 • 0

vote

replies

907

views

minfiData minfi

updated 19 months ago by Basti ▴ 780 • written 19 months ago by clacarion • 0

votes

663

views

methylclockData minfi methylclock minfidata

updated 20 months ago by James W. MacDonald 68k • written 20 months ago by sharangiiv • 0

votes

replies

1.8k

views

RnBeads minfiData minfi EPICarray

updated 2.5 years ago by Basti ▴ 780 • written 2.5 years ago by Jitendra ▴ 10

votes

replies

2.0k

views

methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

updated 2.7 years ago by James W. MacDonald 68k • written 2.7 years ago by Grace • 0

votes

replies

2.3k

views

methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

written 2.7 years ago by Grace • 0

votes

replies

1.3k

views

minfiData ChAMP

3.9 years ago behr201 • 0

votes

replies

1.2k

views

minfi minfiData MethylationArrayData

4.3 years ago ponche_de_kiwi • 0

vote

2.9k

views

minfiData plotsex minfi minfiDataEPIC r

updated 4.7 years ago by suman • 0 • written 4.7 years ago by Bethan • 0

vote

replies

2.5k

views

minfi methylation dataimport minfidata missmethyl

updated 7.2 years ago by James W. MacDonald 68k • written 7.2 years ago by moldach ▴ 20

votes

1.9k

views

minfi minfidata rgl. mac os x el capitan

updated 9.5 years ago by Kasper Daniel Hansen ★ 6.5k • written 9.5 years ago by holbrookjoanna • 0

votes

2.7k

views

minfidata minfi illuminahumanmethylation450k.db illuminahumanmethylation450kanno.ilmn12.hg19

10.6 years ago alejandretheodore • 0

votes

replies

2.4k

views

minfi minfidata illumina methylation dmpfinder

updated 11.2 years ago by James W. MacDonald 68k • written 11.2 years ago by michael.zulyniak • 0

14 results • Page 1 of 1

Recent ...

Replies

Answer: Error installing Seqinfo by fabio.marroni • 0

I am answering my own question. I found the solution thanks to [this post][1], and I am writing here the very simple procedure: 1) Instal…

Comment: Getting a large intercept with DESeq2 by Michael Love 43k

Thanks James -- Denise you can check the "note on factor levels" in the vignette. And I'd recommend `plotCounts()` for looking at individu…

Comment: Getting a large intercept with DESeq2 by James W. MacDonald 68k

As a trivial example, consider this: ``` > model.matrix(~Treatment, data.frame(Treatment = factor(rep(1:3, each = 4)))) (Intercept) Tre…

Answer: Getting a large intercept with DESeq2 by James W. MacDonald 68k

The default parameterization in R is a treatment-contrasts parameterization that sets one of your groups as the baseline. So the intercept …

Answer: Must I do pseudobulk analysis on Cell Surface Protein Labeling data of Single C by ATpoint ★ 5.0k

There is no "MUST", but pseudobulk aggregation is beneficial to a) enable use of tested and robust methods such as limma (though it could u…

Votes

Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors

Issues with downloading biomaRt - SeqInfo and S4 Vectors

Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors

Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif

Using edgeR or DESeq2 to analyze allele-specific expression?

Awards • All