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monocle
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0
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2
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784
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A problem occurs when running the monocle2
monocle
written 4 months ago by
yuheng_yang
• 0
1
vote
1
reply
1.3k
views
Differentially expressed genes in monocle pseudotime
monocle
updated 21 months ago by
Gordon Smyth
53k • written 21 months ago by
kthapa
• 0
0
votes
2
replies
952
views
Singlecell protein surface (ADT) pseudotime techniques
monocle
slingshot
2.3 years ago
EspressoKris
▴ 10
0
votes
0
replies
932
views
weighting sample group
monocle
SingleCell
DifferentialExpression
3.4 years ago
Sogand
• 0
2
votes
4
replies
4.1k
views
Trajectory analysis for single cell sequencing
single cell
trajectory analysis
tscan
monocle
updated 5.5 years ago by
Aaron Lun
★ 29k • written 5.5 years ago by
lirongrossmann
▴ 50
0
votes
1
reply
4.3k
views
How to customize the color in 'plot_cell_trajectory' function
scRNA seq
monocle
updated 5.6 years ago by
Kevin Blighe
★ 4.0k • written 5.6 years ago by
initialqy
• 0
0
votes
1
reply
3.7k
views
Pseudotime analysis on bulk RNASeq using monocle
pseudotime
monocle
dimensionality
6.0 years ago
pbachali
▴ 50
0
votes
1
reply
6.9k
views
monocle error at orderCells
scRNA
monocle
packages
Tutorial
6.4 years ago
444579004
• 0
5
votes
3
replies
2.5k
views
Setting gene expression thresholds for trajectory analysis using Monocle
monocle
differential gene expression
detectgenes function
Tutorial
7.0 years ago
S.Webb6
▴ 40
1
vote
1
reply
3.5k
views
Mean Expression Calculation scRNA-seq (All cells or only Expressed Cells)
scrnaseq
monocle
updated 7.7 years ago by
davide risso
▴ 980 • written 7.7 years ago by
chitsazanalex
▴ 10
0
votes
1
reply
2.2k
views
Converting scater-normalized UMI data to Monocle CellDataSet
scater
scran
umi
monocle
updated 7.8 years ago by
Aaron Lun
★ 29k • written 7.8 years ago by
supremerulersuraj
• 0
0
votes
1
reply
2.6k
views
monocle: Error in if (cds@expressionFamily@vfamily %in% c("negbinomial", "negbinomial.size"))
monocle
7.9 years ago
Mehmet Ilyas Cosacak
• 0
1
vote
5
replies
3.4k
views
Monocle causes R session to crash
software error
monocle
updated 8.5 years ago by
kevin.rue
▴ 350 • written 10.2 years ago by
galib36
▴ 10
0
votes
0
replies
2.0k
views
Documentation of "branch_states" and "branch_labels" arguments
monocle
8.5 years ago
kevin.rue
▴ 350
0
votes
0
replies
3.5k
views
Monocle plot_pseudotime_heatmap : Error in cutree(tree, cutree_n) : elements of 'k' must be between 1 and 3
R
monocle
8.5 years ago
A.H
• 0
3
votes
1
reply
1.6k
views
Normalizing vs RNA content in scRNAseq data
monocle
scran
updated 8.5 years ago by
Aaron Lun
★ 29k • written 8.5 years ago by
ankur.chakravarthy.10
▴ 40
0
votes
3
replies
1.9k
views
Batch effects and model matrices
deseq2
single cell
monocle
updated 8.6 years ago by
Michael Love
43k • written 8.6 years ago by
bvernot
• 0
0
votes
0
replies
1.4k
views
Basic Question: How to get appropriate pDATA structure in monocle from cufflinks/cuffnorm
cufflinks
monocle
8.7 years ago
alexandriapinto1
▴ 10
0
votes
1
reply
1.5k
views
Monocle group sizes
monocle
8.8 years ago
ribioinfo
▴ 100
0
votes
1
reply
4.2k
views
error in monocle.
monocle
updated 8.8 years ago by
driver.ian
• 0 • written 8.9 years ago by
ikwak
• 0
0
votes
0
replies
2.4k
views
Monocle-strange differential expression results
monocle
differential expression
10.1 years ago
sunil.mangalam
• 0
0
votes
0
replies
1.9k
views
error: no slot of name "expressionFamily" for this object of class "CellDataSet"
monocle
bugs
10.2 years ago
wanghao1993333
• 0
1
vote
2
replies
2.2k
views
Error message running DE-test in Monocle
monocle
cummerbund
DE
rnaseq
updated 10.5 years ago by
ksekine
• 0 • written 10.8 years ago by
Jon Bråte
▴ 270
23 results • Page
1 of 1
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TikTs33ssalpc
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This rotation style program sounds like a great way to explore different fields before committing to one. Similarly, apkgamex lets users ex…
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TikTs33ssalpc
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Comment: Bile acid analysis with limpa
by
ATpoint
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Wilcox/Mann-Whitney-U cannot work because it is bound to sample size even when all of group X are lower than all of group Y. At 4 vs 3 the …
Comment: chemmineOB install help
by
Jeremy
• 0
I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
Gordon Smyth
53k
The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…
Votes
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
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Answer: When to use edgeR or limma
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