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monocle
•
reset
0
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60
views
A problem occurs when running the monocle2
monocle
21 days ago
yuheng_yang
• 0
1
vote
1
reply
1.0k
views
Differentially expressed genes in monocle pseudotime
monocle
updated 17 months ago by
Gordon Smyth
53k • written 18 months ago by
kthapa
• 0
0
votes
2
replies
806
views
Singlecell protein surface (ADT) pseudotime techniques
monocle
slingshot
2.0 years ago
EspressoKris
▴ 10
0
votes
0
replies
860
views
weighting sample group
monocle
SingleCell
DifferentialExpression
3.1 years ago
Sogand
• 0
2
votes
4
replies
3.8k
views
Trajectory analysis for single cell sequencing
single cell
trajectory analysis
tscan
monocle
updated 5.2 years ago by
Aaron Lun
★ 29k • written 5.2 years ago by
lirongrossmann
▴ 50
0
votes
1
reply
4.1k
views
How to customize the color in 'plot_cell_trajectory' function
scRNA seq
monocle
updated 5.3 years ago by
Kevin Blighe
★ 4.0k • written 5.3 years ago by
initialqy
• 0
0
votes
1
reply
3.5k
views
Pseudotime analysis on bulk RNASeq using monocle
pseudotime
monocle
dimensionality
5.7 years ago
pbachali
▴ 50
0
votes
1
reply
6.3k
views
monocle error at orderCells
scRNA
monocle
packages
Tutorial
6.1 years ago
444579004
• 0
5
votes
3
replies
2.1k
views
Setting gene expression thresholds for trajectory analysis using Monocle
monocle
differential gene expression
detectgenes function
Tutorial
6.7 years ago
S.Webb6
▴ 40
1
vote
1
reply
3.3k
views
Mean Expression Calculation scRNA-seq (All cells or only Expressed Cells)
scrnaseq
monocle
updated 7.4 years ago by
davide risso
▴ 980 • written 7.4 years ago by
chitsazanalex
▴ 10
0
votes
1
reply
2.0k
views
Converting scater-normalized UMI data to Monocle CellDataSet
scater
scran
umi
monocle
updated 7.5 years ago by
Aaron Lun
★ 29k • written 7.5 years ago by
supremerulersuraj
• 0
0
votes
1
reply
2.4k
views
monocle: Error in if (cds@expressionFamily@vfamily %in% c("negbinomial", "negbinomial.size"))
monocle
7.6 years ago
Mehmet Ilyas Cosacak
• 0
1
vote
5
replies
3.3k
views
Monocle causes R session to crash
software error
monocle
updated 8.2 years ago by
kevin.rue
▴ 350 • written 9.9 years ago by
galib36
▴ 10
0
votes
0
replies
1.9k
views
Documentation of "branch_states" and "branch_labels" arguments
monocle
8.2 years ago
kevin.rue
▴ 350
0
votes
0
replies
3.3k
views
Monocle plot_pseudotime_heatmap : Error in cutree(tree, cutree_n) : elements of 'k' must be between 1 and 3
R
monocle
8.2 years ago
A.H
• 0
3
votes
1
reply
1.5k
views
Normalizing vs RNA content in scRNAseq data
monocle
scran
updated 8.2 years ago by
Aaron Lun
★ 29k • written 8.2 years ago by
ankur.chakravarthy.10
▴ 40
0
votes
3
replies
1.7k
views
Batch effects and model matrices
deseq2
single cell
monocle
updated 8.3 years ago by
Michael Love
43k • written 8.3 years ago by
bvernot
• 0
0
votes
0
replies
1.3k
views
Basic Question: How to get appropriate pDATA structure in monocle from cufflinks/cuffnorm
cufflinks
monocle
8.4 years ago
alexandriapinto1
▴ 10
0
votes
1
reply
1.5k
views
Monocle group sizes
monocle
8.5 years ago
ribioinfo
▴ 100
0
votes
1
reply
4.1k
views
error in monocle.
monocle
updated 8.5 years ago by
driver.ian
• 0 • written 8.6 years ago by
ikwak
• 0
0
votes
0
replies
2.1k
views
Monocle-strange differential expression results
monocle
differential expression
9.8 years ago
sunil.mangalam
• 0
0
votes
0
replies
1.8k
views
error: no slot of name "expressionFamily" for this object of class "CellDataSet"
monocle
bugs
9.9 years ago
wanghao1993333
• 0
1
vote
2
replies
2.1k
views
Error message running DE-test in Monocle
monocle
cummerbund
DE
rnaseq
updated 10.2 years ago by
ksekine
• 0 • written 10.5 years ago by
Jon Bråte
▴ 270
23 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 filtering vs edgeR filtering
by
likely.bonobo.smhi
• 0
Developed by RobTop Games, [geometry dash](https://geometrydash-game.one/) first appeared on mobile platforms before expanding to include…
Comment: DESeq2 filtering vs edgeR filtering
by
likely.bonobo.smhi
• 0
[geometry dash](https://geometrydash-game.one/)
Comment: DESeq2 filtering vs edgeR filtering
by
likely.bonobo.smhi
• 0
Geometry Dash has become a renowned name in the world of fast-paced platformer games, capturing the hearts of gamers across the globe.
Comment: Error Loading Experiment from SimBenchData Package
by
ksankaran
• 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
ATpoint
★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Votes
Comment: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
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