Bioconductor Nmf

Showing : nmf • reset

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5.7k

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NMF Biobase

updated 3.7 years ago by shepherl 4.3k • written 3.7 years ago by Abhishek • 0

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2.5k

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NMF scater

5.3 years ago lirongrossmann ▴ 50

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732

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NMF ZeiselBrainData

5.6 years ago sofia.puvogel • 0

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2.0k

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MutationalPatterns NMF

6.7 years ago TRASA • 0

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4.2k

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somaticsignatures NMF

updated 7.3 years ago by Xin • 0 • written 7.6 years ago by aslam.mohammed398 • 0

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1.2k

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NMF log2 classification bioconductor

7.7 years ago • updated 7.6 years ago Seymoo • 0

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1.5k

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NMF somaticsignatures R 3.4.3

updated 7.9 years ago by shepherl 4.3k • written 7.9 years ago by samuel.fux • 0

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4.0k

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somaticsignatures NMF

updated 8.3 years ago by grimmmmer • 0 • written 9.0 years ago by ns • 0

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3.2k

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deseq2 combat outliers NMF

updated 8.7 years ago by Michael Love 43k • written 8.7 years ago by noname • 0

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1.5k

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NMF minfi

9.9 years ago yura.grabovska ▴ 30

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1.6k

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affy coefmap nmf

updated 10.1 years ago by James W. MacDonald 68k • written 10.1 years ago by thrabe • 0

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2.2k

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sva somaticsignatures batch effect nmf

updated 10.2 years ago by Jeff Leek ▴ 650 • written 10.2 years ago by kw10 • 0

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2.0k

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NMF bioconductor R

updated 10.6 years ago by Martin Morgan 25k • written 10.6 years ago by Deepak Tanwar ▴ 10

13 results • Page 1 of 1

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Comment: GOseq Probability Weight Function bad fit by a2sahaaaq2c • 0

the mobile gaming world offers a different kind of strategic challenge. Many users today are shifting from heavy data processing to lighthe…

Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0

Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…

Comment: DiffBind plot.profile error by a2sahaaaq2c • 0

To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…

Comment: soGGi error by shepherl 4.3k

We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…

Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Votes

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

C: Why limma, edgeR, and DESeq did not implement fold change moderation first?

Comment: using limma trend workflow in CAMERA

C: z-score with DESeq2?

Awards • All

Popular Question to Guido Hooiveld ★ 4.1k