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Showing :
oligoclasses
•
reset
0
votes
3
replies
1.6k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R
oligoClasses
Oligoclass
Bioconductor
Oligo
written 3.2 years ago by
tanya
• 0
2
votes
8
replies
1.2k
views
pdInfoBuilder created problematic package for Affymetrix chip tiling array
oligoClasses
oligo
pdInfoBuilder
2.8 years ago • updated 2.7 years ago
efoss
▴ 10
2
votes
6
replies
3.8k
views
Can't install package oligoClasses
R
oligoClasses
ff
updated 3.6 years ago by
Kevin Blighe
★ 3.9k • written 3.6 years ago by
salamandra
▴ 20
2
votes
2
replies
1.9k
views
IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges
oligoclasses
BiocGenerics
5.9 years ago
GENOMIC_region
• 0
0
votes
7
replies
1.7k
views
oligo and GenericPDInfo
affy
oligoclasses
oligo package
pdinfobuilder
annotationdbi
updated 6.8 years ago by
James W. MacDonald
65k • written 6.8 years ago by
Aedin Culhane
▴ 510
2
votes
1
reply
1.2k
views
Output of ArrayExpress() function
oligo
oligoclasses
arrayexpress
updated 7.3 years ago by
James W. MacDonald
65k • written 7.3 years ago by
ste0891
• 0
2
votes
4
replies
1.3k
views
getProbeInfo and exprs return matrices and data.frames of different dimensions
oligo
oligoclasses
affy
updated 7.5 years ago by
James W. MacDonald
65k • written 7.5 years ago by
mark.aaron.fisher
• 0
0
votes
2
replies
2.4k
views
Cannot install Oligo package
oligo
oligoclasses
7.8 years ago
Anna Dvorkin
▴ 40
0
votes
2
replies
1.8k
views
pdInfoBuilder fails on Affy's GeneChip Human Transcriptome Array 2.0
BiocViews
Annotation
Organism
biocViews
oligo
oligoClasses
BiocViews
BiocViews
Annotation
updated 9.0 years ago by
Jason Hubbard
▴ 20 • written 10.3 years ago by
Guilherme Rocha
▴ 40
0
votes
0
replies
1.5k
views
Error using oligo package with Affymetrix Arabidopsis Gene ST1.0 array data: paCalls() returns error 'vector would be too long'
oligo
oligoClasses
oligo
oligoClasses
10.3 years ago
Peter Crisp
▴ 10
0
votes
1
reply
1.5k
views
limma2annaffy
GO
GUI
annaffy
oligo
oligoClasses
KEGGREST
GO
GUI
annaffy
oligo
oligoClasses
KEGGREST
updated 10.4 years ago by
James W. MacDonald
65k • written 10.4 years ago by
Guest User
★ 13k
0
votes
8
replies
2.1k
views
vsn preprocess with oligo package
vsn
oligo
oligoClasses
vsn
oligo
oligoClasses
updated 11.3 years ago by
James W. MacDonald
65k • written 11.3 years ago by
José LÓPEZ
▴ 110
0
votes
4
replies
2.8k
views
Problems with 'affxparser' package
oligoClasses
oligoClasses
11.3 years ago
Valor Becerra, Luis Miguel
▴ 30
3
votes
4
replies
1.7k
views
cause 'memory not mapped' when use oligo
oligo
oligoClasses
oligo
oligoClasses
updated 11.6 years ago by
Benilton Carvalho
▴ 50 • written 11.6 years ago by
Ou, Jianhong
★ 1.3k
0
votes
4
replies
2.9k
views
Error : package slot missing from signature for generic
Biobase
lumi
oligoClasses
Biobase
lumi
oligoClasses
11.8 years ago
Mark Cowley
▴ 910
0
votes
2
replies
1.4k
views
pdInfoBuilder fails on the new Arabidopsis Gene ST 1.0 & 1.1 arrays
Annotation
oligo
pdInfoBuilder
oligoClasses
Annotation
oligo
pdInfoBuilder
oligoClasses
updated 12.1 years ago by
Benilton Carvalho
★ 4.3k • written 12.1 years ago by
Groot, Philip de
▴ 630
0
votes
0
replies
1.3k
views
Question about using oligo and SNPchip for copy number analysis
SNP
Cancer
graph
oligo
SNPchip
oligoClasses
VanillaICE
crlmm
SNP
Cancer
graph
oligo
15.0 years ago
Min-Han Tan
▴ 40
0
votes
0
replies
871
views
Bioconductor Digest, Vol 68, Issue 7
oligo
pdInfoBuilder
oligoClasses
oligo
pdInfoBuilder
oligoClasses
15.6 years ago
Matt Settles
▴ 70
18 results • Page
1 of 1
Recent ...
Replies
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
numbers 1 to 3 represent observations and/or replicates Control is control. The three controls are shown as Control_1, control_2 and Contr…
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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