Showing : organism • reset
0
votes
6
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1.8k
views
Making use of the Apis mellifera assembly 2 data in goSeq
GO Organism Apis mellifera goseq GO Organism Apis mellifera goseq
updated 13.7 years ago by 16k • written 13.7 years ago by ▴ 30
0
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1
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1.7k
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makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : , bind.data must have non-zero dimensions
BiocViews Annotation Organism biocViews BiocViews BiocViews Annotation Organism biocViews
updated 13.8 years ago by ★ 4.3k • written 13.8 years ago by ▴ 20
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votes
3
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1.4k
views
[Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred f…
Cancer Organism biomaRt GenomicFeatures Cancer Organism biomaRt GenomicFeatures
updated 13.8 years ago by ▴ 660 • written 13.8 years ago by ★ 1.6k
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1
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2.1k
views
PFAM gene enrichment test using GOstats and Category
SNP Annotation GO Organism affy GOstats Category SNP Annotation GO Organism affy
updated 13.9 years ago by ▴ 350 • written 13.9 years ago by ▴ 10
0
votes
2
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2.9k
views
Problem in SPIA: de must be a vector of log2 fold changes. The names of de should be included in the refference array!
Organism limma SPIA Organism limma SPIA
updated 13.9 years ago by ▴ 570 • written 13.9 years ago by ▴ 100
0
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1
reply
1.5k
views
GB_ACC to ENTREZ_ID
Organism Organism
updated 13.9 years ago by ▴ 400 • written 13.9 years ago by ▴ 570
0
votes
0
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1.7k
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limma - 2-color agilent microarray, GO annotation
Microarray Annotation GO Organism limma GOstats oligo ASSIGN Microarray Annotation GO
13.9 years ago Gordon Smyth 53k
0
votes
0
replies
1.6k
views
SPIA package
Pathways Organism SPIA Pathways Organism SPIA
14.0 years ago Tarca, Adi ▴ 570
0
votes
1
reply
1.2k
views
intragenic sequence extraction
Annotation Cancer Organism BSgenome BSgenome GenomicFeatures Annotation Cancer Organism
updated 14.0 years ago by ★ 13k • written 14.0 years ago by ▴ 90
0
votes
1
reply
1.3k
views
custom SNPlocs / BSgenome package
SNP Annotation Organism Homo sapiens BSgenome SNPlocs BSgenome SNP Annotation Organism
updated 14.0 years ago by 16k • written 14.0 years ago by ▴ 100
0
votes
4
replies
8.8k
views
DESeq adjusted pvalue calculation / filtering data
Sequencing Organism qvalue DESeq Sequencing Organism qvalue DESeq
updated 14.0 years ago by ★ 6.0k • written 14.0 years ago by ▴ 20
0
votes
1
reply
2.6k
views
PFAM gene enrichment test using GOstats and Category
Annotation GO Organism GOstats Category Annotation GO Organism GOstats Category
updated 14.0 years ago by ★ 7.2k • written 14.0 years ago by ▴ 10
0
votes
0
replies
993
views
Fwd: extract introns
Cancer Organism BSgenome BSgenome Cancer Organism BSgenome BSgenome
14.0 years ago Steve Lianoglou ★ 13k
0
votes
3
replies
2.0k
views
[BioMart Users] biomaRt returning multiple columns out of order
Organism Arabidopsis thaliana biomaRt Organism Arabidopsis thaliana biomaRt
updated 14.1 years ago by 1.6k • written 14.2 years ago by ▴ 20
0
votes
0
replies
1.3k
views
question for you on SPIA package
Pathways Organism SPIA Pathways Organism SPIA
14.2 years ago Tarca, Adi ▴ 570
0
votes
1
reply
1.0k
views
How to create annotation package for not a supported organism
Annotation GO Organism hgug4112a Annotation GO Organism hgug4112a
updated 14.2 years ago by ★ 6.8k • written 14.2 years ago by ▴ 90
0
votes
2
replies
1.7k
views
Simple GO pie and GOSim install error
GO Organism biomaRt GOSim GO Organism biomaRt GOSim
updated 14.2 years ago by ▴ 40 • written 14.2 years ago by ★ 7.2k
0
votes
0
replies
1.5k
views
Simple GO pie and GOSim install error
GO Organism biomaRt GOSim GO Organism biomaRt GOSim
14.2 years ago Olivier Lucas ▴ 40
0
votes
2
replies
1.7k
views
question on SPIA pavkage application
Organism SPIA Organism SPIA
updated 14.3 years ago by ▴ 150 • written 14.3 years ago by ▴ 380
0
votes
2
replies
2.1k
views
organism abbreviations (SPIA package)
Microarray Organism SPIA Microarray Organism SPIA
updated 14.3 years ago by ▴ 340 • written 14.3 years ago by ▴ 380
0
votes
2
replies
1.6k
views
pckg Resourcerer : can't read "affy_HG-U133_Plus_2.zip" with getResourcerer()
Annotation Organism Annotation Organism
updated 14.3 years ago by ▴ 150 • written 14.3 years ago by ▴ 10
0
votes
0
replies
1.0k
views
limma design and contrast matrices for two-color (two-channel) data with common biological reference, not common mRNA reference
Microarray Organism limma oligo Microarray Organism limma oligo
14.4 years ago Chris Lasher ▴ 10
0
votes
0
replies
1.8k
views
Using pdInfoBuilder for Human Exon Array
BiocViews Annotation Organism cdf biocViews oligo pdInfoBuilder BiocViews BiocViews cdf
14.4 years ago Maria Rodrigo-Domingo / Region Nordjyll… ▴ 10
0
votes
4
replies
5.0k
views
An error in oligo: All the CEL files must be of the same type??
BiocViews Annotation Organism biocViews oligo BiocViews BiocViews Annotation Organism
updated 14.5 years ago by ★ 4.3k • written 14.5 years ago by ▴ 20
0
votes
0
replies
1.0k
views
How to: design matrices for multi organism parts experiment
Organism BRAIN Organism BRAIN
14.5 years ago Hans ▴ 10
0
votes
1
reply
1.1k
views
Create an non-mainstream organism-specific database for ChIP-chip analysis
Organism ChIPpeakAnno Organism ChIPpeakAnno
updated 14.6 years ago by ★ 7.2k • written 14.6 years ago by ▴ 40
0
votes
0
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1.5k
views
Using ChIPpeakAnno on a non-mainstream organism
Transcription Annotation GO AnnotationData Organism BSgenome biomaRt BSgenome ChIPpeakAnno
14.6 years ago Julie Zhu ★ 4.3k
0
votes
0
replies
1.2k
views
Pathway Analyis for C-difficile microarrays
Organism Organism
14.6 years ago Claus Mayer ▴ 340
0
votes
0
replies
1.5k
views
GoStats and microRNA pipeline using Biomart
miRNA Normalization GO Organism GOstats biomaRt microRNA miRNA Normalization GO Organism
14.7 years ago David ▴ 860
0
votes
2
replies
1.8k
views
GoStats
Organism affy Organism affy
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ▴ 860
0
votes
0
replies
1.6k
views
RE : Question about translate funciton in Biostrings package
Organism Biostrings Organism Biostrings
14.7 years ago li lilingdu ▴ 450
0
votes
3
replies
2.0k
views
find overlaping genes in ENSEMBL gene ID list and NCBI gene ID list
Organism Bos taurus Organism Bos taurus
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ▴ 150
0
votes
4
replies
1.9k
views
Using GOstats for a non-model organism
GO Organism GO Organism
updated 14.8 years ago by 68k • written 14.8 years ago by ▴ 30
0
votes
6
replies
1.7k
views
org.*.eg.db problem
Annotation Organism Annotation Organism
updated 15.0 years ago by 6.7k • written 15.0 years ago by ▴ 200
0
votes
2
replies
2.1k
views
Flanking TSS region for reverse strand using biomaRt
Yeast Organism biomaRt Yeast Organism biomaRt
updated 15.0 years ago by ▴ 10 • written 15.0 years ago by ▴ 340
0
votes
0
replies
1.7k
views
Bioconductor Digest, Vol 93, Issue 26: How to create KEGG's pathway data for SPIA?
Organism KEGGgraph SPIA Organism KEGGgraph SPIA
15.0 years ago Tarca, Adi ▴ 570
0
votes
6
replies
2.0k
views
adding environment variables
Organism Organism
updated 15.1 years ago by ▴ 10 • written 15.1 years ago by ▴ 280
0
votes
1
reply
1.8k
views
error fix.by(by.x, x) in Pdinfobuilder package
BiocViews Microarray Annotation Organism biocViews BiocViews BiocViews Microarray Organism
updated 15.1 years ago by ★ 4.3k • written 15.1 years ago by ▴ 60
0
votes
0
replies
2.1k
views
BioNet - interpretation of node score (Eva Benito Garagorri)
SNP Microarray GO Network Clustering Cancer Organism mgug4122a probe limma convert SNP
15.2 years ago Daniela Beißer ▴ 20
2
votes
3
replies
2.6k
views
How to get position for each gene ID/gene symbol instead of position for each transcript
Organism PROcess biomaRt GenomicFeatures Organism PROcess biomaRt GenomicFeatures
updated 15.3 years ago by ★ 13k • written 15.3 years ago by ★ 1.0k
0
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0
replies
1.5k
views
Error in package goseq
Organism goseq Organism goseq
15.3 years ago Joydeep Mitra ▴ 10
0
votes
0
replies
1.3k
views
SPIA with Mouse Data
Genetics Network Organism SPIA Genetics Network Organism SPIA
15.3 years ago Will Bush ▴ 10
0
votes
1
reply
1.5k
views
Problem with chromLoc object.
Organism hgu133plus2 reb Organism hgu133plus2 reb
updated 15.4 years ago by ▴ 210 • written 15.4 years ago by ▴ 20
0
votes
4
replies
1.7k
views
Using Gostats on a new organism
Organism GOstats Organism GOstats
updated 15.4 years ago by ★ 3.4k • written 15.4 years ago by ▴ 370
0
votes
0
replies
1.5k
views
Building AnnotationDbi Packages - Problems when using makeAnnDbPkg
BiocViews Genetics Annotation GO Organism probe biocViews AnnotationDbi BiocViews GO
15.5 years ago Marc Carlson ★ 7.2k
0
votes
0
replies
1.3k
views
Building AnnotationDbi Packages - Problems when using makeAnnDbPkg
BiocViews Genetics Annotation GO Organism biocViews AnnotationDbi BiocViews BiocViews GO
15.5 years ago Julian Lee ▴ 10
0
votes
0
replies
1.3k
views
SPIA package problem
Microarray GO Cancer Organism hgu95av2 mgug4122a SPIA Microarray GO Cancer Organism
15.5 years ago January Weiner ▴ 370
0
votes
0
replies
1.2k
views
help with SPIA package
Organism limma SPIA Organism limma SPIA
15.5 years ago Barbara Bo-Ju Shih ▴ 40
0
votes
3
replies
1.5k
views
error in gene2pathway results
Organism gene2pathway Organism gene2pathway
updated 15.7 years ago by ★ 7.2k • written 15.7 years ago by ▴ 420
0
votes
6
replies
2.1k
views
PdInfoBuilder for nimblegen array
Annotation Organism oligo pdInfoBuilder Annotation Organism oligo pdInfoBuilder
updated 15.8 years ago by ★ 4.3k • written 15.8 years ago by ▴ 40
219 results • Page 3 of 5
Recent ...
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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much, @ATpoint and @kevin , for your valuable insights. I have carefully checked all your suggestions. First, I examined th…
Answer: Finding duplicated entries in GRangesList by Kevin Blighe ★ 4.0k
The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
Answer: DESeq2 on non-RNASeq counts data by Kevin Blighe ★ 4.0k
The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hello Rui Tang, The buffer overflow error in featureCounts that you encountered is likely due to a compatibility issue between the Subre…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
The issue that you describe with the tumor mutational burden (TMB) plots appearing linear and lacking consistent TMB values across samples …
Votes
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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