Showing : organism • reset
0
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1
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1.4k
views
domainsignatures with non-human KEGG pathways
Pathways Organism domainsignatures Pathways Organism domainsignatures
15.9 years ago Robert Castelo ★ 3.4k
0
votes
3
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1.9k
views
RpsiXML issues with latest Biogrid release files
GO Organism Arabidopsis thaliana graph RpsiXML GO Organism Arabidopsis thaliana graph
updated 16.0 years ago by ▴ 340 • written 16.0 years ago by ▴ 60
0
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1
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1.9k
views
KEGGgraph bug
Pathways Organism SIM KEGGgraph Pathways Organism SIM KEGGgraph
updated 16.0 years ago by ★ 7.2k • written 16.0 years ago by ▴ 270
0
votes
1
reply
1.8k
views
KEGGgraph bug
Organism KEGGgraph Organism KEGGgraph
updated 16.0 years ago by ▴ 340 • written 16.0 years ago by ▴ 270
0
votes
1
reply
1.4k
views
building an annotation library from scratch
miRNA Annotation Organism db0 AnnotationDbi microRNA miRNA Annotation Organism db0
updated 16.1 years ago by ★ 7.2k • written 16.1 years ago by ▴ 610
0
votes
3
replies
2.1k
views
Problem with KEGGgraph
Organism hgu133plus2 KEGGgraph Organism hgu133plus2 KEGGgraph
updated 16.1 years ago by ▴ 570 • written 16.1 years ago by ▴ 270
0
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2
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2.8k
views
annotation and GO for non-model organism
Microarray Annotation GO Organism Microarray Annotation GO Organism
updated 16.2 years ago by ★ 7.2k • written 16.2 years ago by ▴ 150
0
votes
2
replies
1.3k
views
error with "retrain" method of gene2pathway package
Pathways GO Organism Homo sapiens hgu133plus2 gene2pathway Pathways GO Organism
updated 16.2 years ago by 68k • written 16.2 years ago by ▴ 340
0
votes
1
reply
1.5k
views
biomaRt issues
Organism biomaRt Organism biomaRt
updated 16.2 years ago by ★ 13k • written 16.2 years ago by ★ 1.1k
0
votes
0
replies
1.2k
views
Question about inspecting splices indexes
Organism probe oneChannelGUI Organism probe oneChannelGUI
16.4 years ago raffaele calogero ▴ 500
0
votes
0
replies
806
views
Fwd: Re: which package can do GSEA for no model organism
Annotation GO Organism GOstats topGO ASSIGN Annotation GO Organism GOstats topGO ASSIGN
16.4 years ago Pengcheng Yang ▴ 40
0
votes
3
replies
2.1k
views
Fwd: Re: which package can do GSEA for no model organism
Annotation GO Organism ASSIGN Annotation GO Organism ASSIGN
updated 16.4 years ago by ▴ 40 • written 16.4 years ago by ▴ 340
0
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0
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791
views
Fwd: Re: which package can do GSEA for no model organism
GO Organism ASSIGN GO Organism ASSIGN
16.4 years ago Naomi Altman ★ 6.0k
0
votes
1
reply
2.0k
views
Affy Gene ST arrays with "oligo"
BiocViews Annotation Organism affy PROcess biocViews BiocViews BiocViews Annotation affy
updated 16.5 years ago by ★ 3.9k • written 16.5 years ago by ▴ 830
0
votes
1
reply
917
views
Category: testing for non-random chromosomal distribution of DE genes
GO Organism drosophila2 GO Organism drosophila2
updated 16.5 years ago by ★ 7.2k • written 16.5 years ago by ▴ 320
0
votes
2
replies
1.9k
views
KEGGgraph, error
Organism hgu133a KEGGgraph Organism hgu133a KEGGgraph
updated 16.6 years ago by ▴ 20 • written 16.6 years ago by ▴ 380
0
votes
0
replies
2.2k
views
vacancy postdoc or PhD in the Netherlands
Metabolomics Network Organism Metabolomics Network Organism
16.6 years ago Hendriks, M. ▴ 10
0
votes
13
replies
4.1k
views
GEOmetadb and gse organism type
Cancer Breast Organism GEOmetadb Cancer Breast Organism GEOmetadb
updated 16.7 years ago by 21k • written 16.7 years ago by ▴ 180
0
votes
1
reply
1.6k
views
Request for the assistance to use MEDME
Microarray Normalization Organism probe limma MEDME cycle ASSIGN Microarray Normalization
updated 16.9 years ago by ▴ 30 • written 16.9 years ago by ▴ 90
0
votes
1
reply
1.4k
views
FW: Request for the assistance to use MEDME
Normalization Organism probe MEDME cycle ASSIGN Normalization Organism probe MEDME cycle
updated 17.0 years ago by ▴ 30 • written 17.0 years ago by ▴ 90
0
votes
0
replies
1.2k
views
FW: How to plot microRNA chromosome location
Organism idiogram Organism idiogram
17.1 years ago Dykema, Karl ▴ 90
0
votes
5
replies
2.1k
views
newbie problems with AnnBuilder
Annotation Organism cdf probe affy AnnBuilder Annotation Organism cdf probe affy
updated 17.1 years ago by ★ 7.2k • written 17.1 years ago by ▴ 830
0
votes
5
replies
1.6k
views
Arabidopsis chromosome location mappings
Organism ath1121501 Organism ath1121501
updated 17.1 years ago by ▴ 10 • written 17.1 years ago by ▴ 330
0
votes
3
replies
1.1k
views
Finding Annotation of CEL file formats
Organism probe Organism probe
updated 17.2 years ago by ★ 3.9k • written 17.2 years ago by ▴ 230
0
votes
2
replies
1.7k
views
GO over representation analysis
Annotation Pathways GO Organism db0 AnnBuilder PROcess maanova AnnotationDbi Annotation
updated 17.2 years ago by ▴ 220 • written 17.2 years ago by ★ 7.2k
0
votes
1
reply
1.2k
views
ABPkgBuilder question
Organism AnnBuilder Organism AnnBuilder
updated 17.3 years ago by ★ 7.2k • written 17.3 years ago by ▴ 40
0
votes
1
reply
1.5k
views
Is it possible to use RMA on Agilent Data
Organism Arabidopsis thaliana probe affy oligo Organism Arabidopsis thaliana probe affy
updated 17.7 years ago by ★ 1.3k • written 17.7 years ago by ▴ 110
0
votes
3
replies
2.0k
views
CGHcall error
Cancer Organism MANOR oligo CGHcall BAC Cancer Organism MANOR oligo CGHcall BAC
updated 17.8 years ago by ★ 2.4k • written 17.8 years ago by ▴ 110
0
votes
8
replies
1.6k
views
Help with base file in AnnBuilder
Annotation Organism Annotation Organism
updated 18.0 years ago by 68k • written 18.0 years ago by ▴ 410
0
votes
0
replies
2.1k
views
Median-Interquartile Normalization
Microarray SystemsBiology Annotation GO Preprocessing Clustering Cancer Yeast Organism GO
18.0 years ago McGee, Monnie ▴ 300
0
votes
5
replies
2.1k
views
KEGG & hyperGTest: an example?
Annotation Yeast Organism Annotation Yeast Organism
updated 18.1 years ago by ▴ 150 • written 18.1 years ago by ★ 1.1k
0
votes
0
replies
1.0k
views
AnnBuilder problem
Organism annotate AnnBuilder Organism annotate AnnBuilder
18.1 years ago Yihuan Xu ▴ 130
0
votes
2
replies
1.4k
views
AnnBuilder: problem with kegg url?
Annotation GO Organism annotate AnnBuilder Annotation GO Organism annotate AnnBuilder
updated 18.1 years ago by ★ 7.2k • written 18.1 years ago by ▴ 20
0
votes
0
replies
864
views
snapCGH package for expression data?
aCGH Organism aCGH snapCGH aCGH Organism aCGH snapCGH
18.2 years ago Lyudmila Mikhaylova ▴ 20
0
votes
2
replies
1.5k
views
AnnBuilder problem
Organism annotate AnnBuilder Organism annotate AnnBuilder
updated 18.3 years ago by 25k • written 18.3 years ago by ▴ 130
0
votes
5
replies
1.8k
views
AnnBuilder problem with custom List of genes
Annotation Organism probe AnnBuilder Annotation Organism probe AnnBuilder
18.3 years ago claudio.is@libero.it ▴ 210
0
votes
1
reply
986
views
problem with annbuilder
Annotation Organism AnnBuilder Annotation Organism AnnBuilder
updated 18.4 years ago by ▴ 70 • written 18.4 years ago by ▴ 10
0
votes
3
replies
1.6k
views
Building the tomato annotation library(Affy)
Annotation Organism AnnBuilder Annotation Organism AnnBuilder
18.6 years ago • updated 18.5 years ago Groot, Philip de ▴ 630
0
votes
4
replies
1.7k
views
cluster a set of genes based on another set of genes
Organism limma Organism limma
updated 18.8 years ago by ▴ 280 • written 18.8 years ago by ▴ 450
0
votes
2
replies
1.4k
views
ABPkgBuilder error: unable to find an inherited method for function "baseFile<-"
GO Cancer Organism AnnBuilder GO Cancer Organism AnnBuilder
updated 18.9 years ago by 16k • written 18.9 years ago by ★ 2.9k
0
votes
0
replies
1.0k
views
ABPkgBuilder error: unable to find an inherited method for function "baseFile<-"
GO Organism AnnBuilder GO Organism AnnBuilder
18.9 years ago Martin Kircher ▴ 20
0
votes
0
replies
900
views
Comparing to background
Organism vsn limma Organism vsn limma
19.0 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
981
views
Comparing to background
Organism vsn limma Organism vsn limma
19.0 years ago Sturgill, David NIH/NIDDK [C] ▴ 10
0
votes
8
replies
2.7k
views
AnnBuilder and Kegg
Pathways GO Survival Cancer Organism annotate affydata vsn AnnBuilder globaltest GO vsn
updated 19.0 years ago by ▴ 190 • written 19.0 years ago by ★ 2.9k
0
votes
7
replies
2.2k
views
annotation package for chicken affyprobes
Annotation Organism Gallus gallus probe AnnBuilder Annotation Organism Gallus gallus probe
updated 19.2 years ago by ▴ 180 • written 19.3 years ago by ▴ 870
0
votes
2
replies
1.5k
views
AnnBuilder problem for mu11ksuba
Organism mu11ksuba annotate limma gcrma matchprobes annaffy AnnBuilder Organism mu11ksuba
updated 19.7 years ago by ▴ 780 • written 19.7 years ago by ★ 1.4k
0
votes
1
reply
1.1k
views
AnnBuilder error
GO Organism annotate AnnBuilder GO Organism annotate AnnBuilder
updated 19.7 years ago by ▴ 780 • written 19.8 years ago by ▴ 510
0
votes
4
replies
1.7k
views
Error while using AnnBuilder
Annotation GO Organism annotate AnnBuilder Annotation GO Organism annotate AnnBuilder
updated 19.8 years ago by ★ 7.4k • written 19.8 years ago by ▴ 160
0
votes
1
reply
946
views
Error with AnnBuilder ABPkgBuilder
GO Organism annotate AnnBuilder GO Organism annotate AnnBuilder
updated 19.8 years ago by ▴ 780 • written 19.8 years ago by ▴ 20
0
votes
1
reply
1.1k
views
help aobut AnnBuilder
GO Organism AnnBuilder GO Organism AnnBuilder
updated 19.9 years ago by ▴ 780 • written 19.9 years ago by ▴ 30
219 results • Page 4 of 5
Recent ...
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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much, @ATpoint and @kevin , for your valuable insights. I have carefully checked all your suggestions. First, I examined th…
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The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
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The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…
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Hello Rui Tang, The buffer overflow error in featureCounts that you encountered is likely due to a compatibility issue between the Subre…
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The issue that you describe with the tumor mutational burden (TMB) plots appearing linear and lacking consistent TMB values across samples …
Votes
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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