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Showing :
pathway
•
reset
2
votes
11
replies
4.5k
views
Recent build and parsing error in pathview
pathview
KEGGgraph
gage
pathway
pathway analysis
6.8 years ago
Luo Weijun
★ 1.6k
2
votes
2
replies
1.4k
views
paxtoolsr how to extract Modificationfeature related to a node
pathway
paxtools
9.6 years ago
Guido Leoni
▴ 200
5
votes
6
replies
1.5k
views
DESeq2 w. pathway/network info as a prior knowledge
deseq2
pathway
ihw
updated 5.2 years ago by
Michael Love
42k • written 5.3 years ago by
guidobarzaghi
▴ 20
0
votes
2
replies
742
views
Adjusting DESeq2 p-values through IHW using pathway information as covariate
IHW
deseq2
Pathway
updated 5.2 years ago by
Michael Love
42k • written 5.2 years ago by
guidobarzaghi
▴ 20
2
votes
3
replies
1.0k
views
Accounting for Gene Set Overlaps in Goana and Kegga Results
limma
pathway
updated 4.7 years ago by
mikhael.manurung
▴ 270 • written 4.7 years ago by
Dario Strbenac
★ 1.5k
4
votes
4
replies
1.8k
views
How I interpret this plot from pathview
pathview
kegg
r
pathway
4.5 years ago
AZ
▴ 30
3
votes
3
replies
4.8k
views
Genelist input for ClusterProfiler
R
ClusterProfiler
Enrichment
Pathway
updated 11 months ago by
Guido Hooiveld
★ 4.0k • written 4.1 years ago by
t.b.kuipers
• 0
0
votes
3
replies
1.1k
views
extracting the genes associated with a specific pathway
pathway
KEGG
annotation
annotationhub
updated 4.0 years ago by
James W. MacDonald
65k • written 4.0 years ago by
Bogdan
▴ 670
2
votes
1
reply
986
views
GSEA generate genesets
pathway
KEGGREST
GSEA
updated 3.2 years ago by
Kevin Blighe
★ 3.9k • written 3.2 years ago by
MOHAMMAD
• 0
1
vote
3
replies
662
views
Can CAMERA analyze just one particular pathway
pathway
ORA
limma
CAMERA
DGE
updated 9 months ago by
Gordon Smyth
50k • written 9 months ago by
manuelsokolov
• 0
0
votes
1
reply
917
views
igraph page_rank miR2Pathway: Top ranked list, printing out pathway names
igraph
miR2Pathway
Pathway
page_rank
updated 6.1 years ago by
Martin Morgan
25k • written 6.1 years ago by
genomic8328
▴ 10
0
votes
1
reply
941
views
News:
SBGNview manuscript on bioRxiv now
pathway
SBGNview
Reactome
pathview
PANTHER
written 3.1 years ago by
Luo Weijun
★ 1.6k
0
votes
0
replies
785
views
Help with mapping Kegg hsa01100 using pathview
kegg
pathway
pathview
5.2 years ago
Ahdee
▴ 50
13 results • Page
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Recent ...
Replies
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
Hi @marcelramos Thanks for the clarification. Yes, I have installed `org.Vdahlaie.eg.db` using the code you and Guido suggested and now i…
Comment: European Bioconductor Conference 2023 planning
by
angelaesper43
• 0
@Maria Doyle[sexdolltech][1]Hosting EuroBioC provides an excellent opportunity to showcase Bioconductor and computational biology research …
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
Dear Daniele, for which Ensembl release would you need the data? the most recent is 112, but if you used a different version before it wou…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
BioinfGuru
▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Awards
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Ken C
• 0
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Johannes Rainer
★ 2.0k
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Chris
▴ 10
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Guido Hooiveld
★ 4.0k
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Michael Love
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