Bioconductor Pathway

Showing : pathway • reset

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662

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pathway ORA limma CAMERA DGE

updated 9 months ago by Gordon Smyth 50k • written 9 months ago by manuelsokolov • 0

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941

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pathway SBGNview Reactome pathview PANTHER

written 3.1 years ago by Luo Weijun ★ 1.6k

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986

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pathway KEGGREST GSEA

updated 3.2 years ago by Kevin Blighe ★ 3.9k • written 3.2 years ago by MOHAMMAD • 0

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1.1k

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pathway KEGG annotation annotationhub

updated 4.0 years ago by James W. MacDonald 65k • written 4.0 years ago by Bogdan ▴ 670

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4.8k

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R ClusterProfiler Enrichment Pathway

updated 11 months ago by Guido Hooiveld ★ 4.0k • written 4.1 years ago by t.b.kuipers • 0

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1.8k

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pathview kegg r pathway

4.5 years ago AZ ▴ 30

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1.0k

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limma pathway

updated 4.7 years ago by mikhael.manurung ▴ 270 • written 4.7 years ago by Dario Strbenac ★ 1.5k

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785

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kegg pathway pathview

5.2 years ago Ahdee ▴ 50

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742

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IHW deseq2 Pathway

updated 5.2 years ago by Michael Love 42k • written 5.2 years ago by guidobarzaghi ▴ 20

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1.5k

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deseq2 pathway ihw

updated 5.2 years ago by Michael Love 42k • written 5.3 years ago by guidobarzaghi ▴ 20

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917

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igraph miR2Pathway Pathway page_rank

updated 6.1 years ago by Martin Morgan 25k • written 6.1 years ago by genomic8328 ▴ 10

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4.5k

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pathview KEGGgraph gage pathway pathway analysis

6.8 years ago Luo Weijun ★ 1.6k

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1.4k

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pathway paxtools

9.6 years ago Guido Leoni ▴ 200

13 results • Page 1 of 1

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Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db") by Patadù ▴ 10

Hi @marcelramos Thanks for the clarification. Yes, I have installed `org.Vdahlaie.eg.db` using the code you and Guido suggested and now i…

Comment: European Bioconductor Conference 2023 planning by angelaesper43 • 0

@Maria Doyle[sexdolltech][1]Hosting EuroBioC provides an excellent opportunity to showcase Bioconductor and computational biology research …

Comment: Ensembl plants at annotationHub? by Johannes Rainer ★ 2.0k

Dear Daniele, for which Ensembl release would you need the data? the most recent is 112, but if you used a different version before it wou…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30

Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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