Bioconductor Pcaexplorer

Showing : pcaexplorer • reset

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DESeq2 pcaExplorer

updated 18 months ago by BioinfGuru ▴ 70 • written 19 months ago by Eric Katagirya • 0

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1.5k

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DESeq2 RNASeq PrincipalComponent pcaExplorer

written 3.0 years ago by James • 0

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2.4k

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PCAtools pcaExplorer pcaMethods

updated 3.5 years ago by Federico Marini ▴ 180 • written 3.5 years ago by m610110001 • 0

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4.3k

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PCAtools edgeR pcaExplorer RNASeq RNAseq123

3.6 years ago Alan • 0

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3.2k

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GeneTonic org.Sc.sgd.db pcaExplorer topGO EnrichmentBrowser

updated 3.8 years ago by Federico Marini ▴ 180 • written 3.8 years ago by chase.mateusiak • 0

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40k

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DESeq2 pcaExplorer

updated 4.7 years ago by Michael Love 43k • written 4.8 years ago by vanbelj ▴ 30

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2.5k

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EDA pcaExplorer PCAtools PCA

updated 4.0 years ago by Miguel ▴ 20 • written 5.3 years ago by k.vitting.seerup ▴ 120

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2.7k

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annotation go pcaExplorer AnnotationForge

updated 6.8 years ago by James W. MacDonald 68k • written 6.8 years ago by psutton • 0

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1.6k

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pcaexplorer genespca deseq2

updated 8.1 years ago by Michael Love 43k • written 8.1 years ago by sally_b86 • 0

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2.9k

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pca2go pcaexplorer

updated 8.3 years ago by Federico Marini ▴ 180 • written 8.3 years ago by reubenmcgregor88 • 0

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deseq2 pcaexplorer

8.3 years ago reubenmcgregor88 • 0

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pcaExplorer pca

updated 9.1 years ago by Federico Marini ▴ 180 • written 9.1 years ago by swaegers.janne • 0

12 results • Page 1 of 1

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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Answer: PTM analysis in LIMPA by Gordon Smyth 53k

For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…

Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

Awards • All

Commentator to sina.nassiri ▴ 130