Biostar Pcaexplorer

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DESeq2 RNASeq PrincipalComponent pcaExplorer

updated 3 months ago by oletaschmeler • 0 • written 4 months ago by James • 0

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403

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PCAtools pcaExplorer pcaMethods

updated 9 months ago by Federico Marini ▴ 150 • written 9 months ago by m610110001 • 0

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909

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PCAtools edgeR pcaExplorer RNASeq RNAseq123

11 months ago Alan • 0

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955

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GeneTonic org.Sc.sgd.db pcaExplorer topGO EnrichmentBrowser

updated 13 months ago by Federico Marini ▴ 150 • written 13 months ago by chase.mateusiak • 0

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DESeq2 pcaExplorer

updated 2.0 years ago by Michael Love 39k • written 2.0 years ago by vanbelj ▴ 20

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EDA pcaExplorer PCAtools PCA

updated 15 months ago by Miguel ▴ 10 • written 2.6 years ago by k.vitting.seerup ▴ 120

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annotation go pcaExplorer AnnotationForge

updated 4.1 years ago by James W. MacDonald 62k • written 4.1 years ago by psutton • 0

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806

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pcaexplorer genespca deseq2

updated 5.4 years ago by Michael Love 39k • written 5.4 years ago by sally_b86 • 0

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pca2go pcaexplorer

updated 5.6 years ago by Federico Marini ▴ 150 • written 5.6 years ago by reubenmcgregor88 • 0

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deseq2 pcaexplorer

5.6 years ago reubenmcgregor88 • 0

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pcaExplorer pca

updated 6.4 years ago by Federico Marini ▴ 150 • written 6.4 years ago by swaegers.janne • 0

11 results • Page 1 of 1

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Comment: DiffBind with ChIPseq from histone analysis: EdgeR or Deseq2? by Giulia • 0

Hi Rory, Thank you for your quick reply and advice on the matter. The following are the MAplots for the analysis using the background=TRU…

Answer: DESeq2 lfcShrink: swapping reference gives different results for the same compar by ATpoint ★ 2.4k

I asked the same some years back: https://support.bioconductor.org/p/p134551/#p134561

Comment: FlowSOM with unrelated channels by helucro ▴ 70

Could you perhaps comment one why you would want to include non-biological "unrelated" channels such as time and event length for clusterin…

Answer: DiffBind with ChIPseq from histone analysis: EdgeR or Deseq2? by Rory Stark ★ 4.6k

It is unusual to see such a big difference between the two analysis methods, although it is more likely when you have only two replicates d…

Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g. by Rory Stark ★ 4.6k

You need to call `dba.normalize()` twice, first to establish the normalization calculations, and the second time to retrieve them: cou…

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Comment: FlowSOM with unrelated channels

Answer: DESeq2 lfcShrink: swapping reference gives different results for the same compar

Answer: Can I run DESeq2 with SMART-Seq data

Comment: RUVSeq and DESeq2 -- all variables in design formula must be columns in colData

A: Compare and filter two BAM files, one record at a time

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Teacher to Michael Love 39k