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pd.hta.2.0
•
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0
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2
replies
1.5k
views
pd.hta.2.0 not installed with Bioconductor 3.5 BiocInstaller 1.26.0 R 3.4.1
package installation
pd.hta.2.0
6.7 years ago
alexander2073
• 0
0
votes
2
replies
1.9k
views
Reading CEL files using Oligo and pd.hta.2.0 packages in Windows 7
oligo
pd.hta.2.0
CEL
R
windows 7
6.7 years ago
ladhikari
• 0
2
votes
3
replies
1.5k
views
Filtering of lowly expressed probes in HTA 2.0 using new pd.hta.2.0 version 3.12.2
pd.hta.2.0
hta2.0
affycoretools
updated 6.7 years ago by
James W. MacDonald
65k • written 6.7 years ago by
relathman
▴ 20
5
votes
9
replies
5.6k
views
Pre-processing of HTA 2.0 array
pd.hta.2.0
updated 7.5 years ago by
James W. MacDonald
65k • written 7.5 years ago by
pbachali
▴ 50
3
votes
5
replies
2.2k
views
Fail to install "AnnotationHub"
software error
annotation
genefilter
pd.hta.2.0
updated 7.6 years ago by
Martin Morgan
25k • written 7.6 years ago by
Lian Liu
▴ 20
0
votes
5
replies
1.1k
views
pd.hta.2.0 oddity, possible RSQLite bug?
oligo
rsqlite
pd.hta.2.0
updated 7.6 years ago by
James W. MacDonald
65k • written 7.6 years ago by
Vincent J. Carey, Jr.
6.7k
9
votes
2
replies
2.4k
views
How to deal with Affymetrix GeneChip probeids that map to multiple genes
hta20sttranscriptcluster.db
probe mapping
annotation
pd.hta.2.0
annotationdbi
updated 7.6 years ago by
James W. MacDonald
65k • written 7.6 years ago by
relathman
▴ 20
2
votes
13
replies
3.1k
views
problems filtering antigenomic probes from HTA 2.0
pd.hta.2.0
R
7.7 years ago • updated 7.2 years ago
s.munster
▴ 40
3
votes
3
replies
1.3k
views
Trouble annotating HTA microarray
hta
pd.hta.2.0
hta20sttranscriptcluster.db
updated 7.8 years ago by
James W. MacDonald
65k • written 7.8 years ago by
giroudpaul
▴ 40
3
votes
3
replies
2.6k
views
Problem using RMA Method in 'Oligo' with HTAFeatureset Objects
affymetrix microarrays
microarray
pd.hta.2.0
oligo
rma
updated 8.1 years ago by
James W. MacDonald
65k • written 8.1 years ago by
jennifer.drake
• 0
7
votes
16
replies
2.4k
views
Can "Glue Grant" arrays be processed with pd.hta.2.0?
pd.hta.2.0
ggh3
oligo
glue grant
updated 8.3 years ago by
James W. MacDonald
65k • written 8.3 years ago by
Robert Castelo
★ 3.3k
0
votes
1
reply
1.5k
views
HTA analysis at transcript level
pd.hta.2.0
transcript
differential gene expression
updated 8.5 years ago by
James W. MacDonald
65k • written 8.5 years ago by
jacorvar
▴ 40
1
vote
0
replies
2.3k
views
The current annotation for Affymetrix HTA 2.0 array is problematic
oligo
pdInfoBuilder
pd.hta.2.0
8.8 years ago
tangboyun
▴ 30
13 results • Page
1 of 1
Recent ...
Replies
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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