Bioconductor Promoter

Showing : promoter • reset

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1.6k

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promoter GenomicRanges rtracklayer GRanges

4.2 years ago Arslan • 0

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1.8k

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promoter

updated 5.5 years ago by Hervé Pagès 16k • written 5.5 years ago by Charles Plessy ▴ 180

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1.8k

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r granges promoter

updated 6.7 years ago by Hervé Pagès 16k • written 6.7 years ago by eggrandio • 0

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1.4k

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TSS promoter cage cager

7.0 years ago bharata1803 ▴ 60

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1.8k

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genomicranges genomicfeatures promoter upstream_flank

7.2 years ago Wojeff • 0

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2.7k

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repitools promoter tss annotation

7.7 years ago Ryan C. Thompson ★ 7.9k

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2.6k

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TxDB genomicfeatures promoter getpromoterseq

updated 7.7 years ago by Hervé Pagès 16k • written 7.7 years ago by rbenel ▴ 50

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1.6k

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dexseq promoter utr

updated 9.5 years ago by Alejandro Reyes ★ 1.9k • written 9.5 years ago by joan.hooper • 0

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2.6k

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bsgenome txdb promoter

updated 9.8 years ago by Martin Morgan 25k • written 9.8 years ago by sekawaiwai2006 ▴ 20

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3.6k

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promoter granges refseq ucsc organismdb

updated 10.0 years ago by Robert Castelo ★ 3.4k • written 10.0 years ago by efoss ▴ 10

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1.9k

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VariantAnnotation promoter drosophila melanogaster

updated 10.9 years ago by Valerie Obenchain ★ 6.8k • written 10.9 years ago by lidia.mateo ▴ 30

11 results • Page 1 of 1

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Comment: upstream git branches of bioc-release by TrentonCollier99 • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Comment: upstream git branches of bioc-release by Jeroen ▴ 10

OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.

Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k

I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```

Votes

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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