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promoter
•
reset
0
votes
2
replies
1.6k
views
Failed to get promoters using promoters() in R 4.0.3.
promoter
GenomicRanges
rtracklayer
GRanges
4.3 years ago
Arslan
• 0
3
votes
6
replies
1.9k
views
Better way to find head to head GRanges?
promoter
updated 5.6 years ago by
Hervé Pagès
16k • written 5.7 years ago by
Charles Plessy
▴ 180
1
vote
3
replies
1.9k
views
Obtain coordinates of 5' upstream region up to closest coding region
r
granges
promoter
updated 6.8 years ago by
Hervé Pagès
16k • written 6.9 years ago by
eggrandio
• 0
0
votes
0
replies
1.4k
views
CAGEr get TSS in bed file
TSS
promoter
cage
cager
7.1 years ago
bharata1803
▴ 60
0
votes
0
replies
1.9k
views
GenomicFeatures: How to extract a gene's upstream region of TSS up to the end position of the flanking (nearby) gene.
genomicranges
genomicfeatures
promoter
upstream_flank
7.3 years ago
Wojeff
• 0
0
votes
3
replies
2.8k
views
How to handle multi-TSS genes in Repitools?
repitools
promoter
tss
annotation
7.8 years ago
Ryan C. Thompson
★ 7.9k
1
vote
5
replies
2.6k
views
Extract genomic features from a TxDb-like object
TxDB
genomicfeatures
promoter
getpromoterseq
updated 7.9 years ago by
Hervé Pagès
16k • written 7.9 years ago by
rbenel
▴ 50
1
vote
2
replies
1.7k
views
DEXseq for alternate promoter usage
dexseq
promoter
utr
updated 9.6 years ago by
Alejandro Reyes
★ 1.9k • written 9.6 years ago by
joan.hooper
• 0
1
vote
6
replies
2.6k
views
problem creating txdb object and bsgenome for solanum pennellii
bsgenome
txdb
promoter
updated 9.9 years ago by
Martin Morgan
25k • written 9.9 years ago by
sekawaiwai2006
▴ 20
2
votes
2
replies
3.7k
views
using the "promoters" function with an "OrganismDb" to generate "GRanges" with "REFSEQ" rather than UCSC gene names
promoter
granges
refseq
ucsc
organismdb
updated 10.1 years ago by
Robert Castelo
★ 3.4k • written 10.1 years ago by
efoss
▴ 10
2
votes
2
replies
1.9k
views
promoter definition in VariantAnnotation
VariantAnnotation
promoter
drosophila melanogaster
updated 11.0 years ago by
Valerie Obenchain
★ 6.8k • written 11.0 years ago by
lidia.mateo
▴ 30
11 results • Page
1 of 1
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Comment: Opportunity to host EuroBioC2026 Preconference workshops!
by
TikTsokaas33ocissalpc
• 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
Comment: Ensembl plants at annotationHub?
by
jwp48
• 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa
by
Gordon Smyth
53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures
by
ferran.llobet.cabau
▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub?
by
Guido Hooiveld
★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Votes
Answer: Where do the filename come from in the LOLA datasets?
Bioconductor Maintainer Application
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
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