Bioconductor Promoter

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1.6k

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promoter GenomicRanges rtracklayer GRanges

4.3 years ago Arslan • 0

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1.9k

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promoter

updated 5.6 years ago by Hervé Pagès 16k • written 5.7 years ago by Charles Plessy ▴ 180

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1.9k

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r granges promoter

updated 6.8 years ago by Hervé Pagès 16k • written 6.9 years ago by eggrandio • 0

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1.4k

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TSS promoter cage cager

7.1 years ago bharata1803 ▴ 60

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1.9k

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genomicranges genomicfeatures promoter upstream_flank

7.3 years ago Wojeff • 0

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2.8k

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repitools promoter tss annotation

7.8 years ago Ryan C. Thompson ★ 7.9k

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2.6k

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TxDB genomicfeatures promoter getpromoterseq

updated 7.8 years ago by Hervé Pagès 16k • written 7.8 years ago by rbenel ▴ 50

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1.7k

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dexseq promoter utr

updated 9.6 years ago by Alejandro Reyes ★ 1.9k • written 9.6 years ago by joan.hooper • 0

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2.6k

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bsgenome txdb promoter

updated 9.9 years ago by Martin Morgan 25k • written 9.9 years ago by sekawaiwai2006 ▴ 20

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3.7k

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promoter granges refseq ucsc organismdb

updated 10.1 years ago by Robert Castelo ★ 3.4k • written 10.1 years ago by efoss ▴ 10

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1.9k

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VariantAnnotation promoter drosophila melanogaster

updated 11.0 years ago by Valerie Obenchain ★ 6.8k • written 11.0 years ago by lidia.mateo ▴ 30

11 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by jwp48 • 0

Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!

Answer: Combining two proteomics datasets with limpa by Gordon Smyth 53k

Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…

Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10

Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…

Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k

Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…

Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0

Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…

Votes

A: What is logFC and "B" in methylation analysis ??

limma moderated t-statistics and B-statistics

Comment: Guitar R package requires update due to dependency GenomicFeatures

A: how to control age and gender effect in expression data using DESeq2

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