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promoter
•
reset
0
votes
2
replies
1.6k
views
Failed to get promoters using promoters() in R 4.0.3.
promoter
GenomicRanges
rtracklayer
GRanges
4.4 years ago
Arslan
• 0
3
votes
6
replies
2.0k
views
Better way to find head to head GRanges?
promoter
updated 5.7 years ago by
Hervé Pagès
16k • written 5.7 years ago by
Charles Plessy
▴ 180
1
vote
3
replies
1.9k
views
Obtain coordinates of 5' upstream region up to closest coding region
r
granges
promoter
updated 6.9 years ago by
Hervé Pagès
16k • written 6.9 years ago by
eggrandio
• 0
0
votes
0
replies
1.5k
views
CAGEr get TSS in bed file
TSS
promoter
cage
cager
7.2 years ago
bharata1803
▴ 60
0
votes
0
replies
1.9k
views
GenomicFeatures: How to extract a gene's upstream region of TSS up to the end position of the flanking (nearby) gene.
genomicranges
genomicfeatures
promoter
upstream_flank
7.4 years ago
Wojeff
• 0
0
votes
3
replies
2.9k
views
How to handle multi-TSS genes in Repitools?
repitools
promoter
tss
annotation
7.9 years ago
Ryan C. Thompson
★ 7.9k
1
vote
5
replies
2.7k
views
Extract genomic features from a TxDb-like object
TxDB
genomicfeatures
promoter
getpromoterseq
updated 7.9 years ago by
Hervé Pagès
16k • written 7.9 years ago by
rbenel
▴ 50
1
vote
2
replies
1.7k
views
DEXseq for alternate promoter usage
dexseq
promoter
utr
updated 9.6 years ago by
Alejandro Reyes
★ 1.9k • written 9.6 years ago by
joan.hooper
• 0
1
vote
6
replies
2.7k
views
problem creating txdb object and bsgenome for solanum pennellii
bsgenome
txdb
promoter
updated 10.0 years ago by
Martin Morgan
25k • written 10.0 years ago by
sekawaiwai2006
▴ 20
2
votes
2
replies
3.8k
views
using the "promoters" function with an "OrganismDb" to generate "GRanges" with "REFSEQ" rather than UCSC gene names
promoter
granges
refseq
ucsc
organismdb
updated 10.2 years ago by
Robert Castelo
★ 3.4k • written 10.2 years ago by
efoss
▴ 10
2
votes
2
replies
2.0k
views
promoter definition in VariantAnnotation
VariantAnnotation
promoter
drosophila melanogaster
updated 11.1 years ago by
Valerie Obenchain
★ 6.8k • written 11.1 years ago by
lidia.mateo
▴ 30
11 results • Page
1 of 1
Recent ...
Replies
Comment: Error message that there is no package called Biobase
by
DamionLedner99
• 0
thanks for sharing!!! https://cran.r-project.org/
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC
by
Ben
• 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis
by
James W. MacDonald
68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
varying.mastodon.isyn
• 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency)
by
Marina
• 0
Thank you!
Votes
Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
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Michael Love
43k
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fl
▴ 20
Popular Question
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James W. MacDonald
68k
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rcavalca
▴ 140
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James Aiden
• 0
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