Showing : pwm • reset
2
votes
2
replies
1.3k
views
universalmotif, question about enrich_motifs function and number of hits returned
universalmotif scanning enrich_motifs PWM
4.0 years ago alexandre.blais ▴ 50
2
votes
0
replies
2.7k
views
motifDb PFM vs JASPAR database PFM: conversion to PWM
pwm pfm jaspar motifdb
updated 7.0 years ago by 0 • written 7.2 years ago by ▴ 50
0
votes
0
replies
1.2k
views
Plotting motif enrichment vs background - Jaspar core vertebrates
pwm motifs jaspar meme motif analysis
7.1 years ago rbronste ▴ 60
2
votes
1
reply
3.1k
views
Error: unable to find an inherited method for function searchSeq for signature matrix
pwm tfbstools jaspar
updated 8.3 years ago by ▴ 20 • written 8.3 years ago by ▴ 50
0
votes
1
reply
1.7k
views
PWM with columns that add up to 1
biostrings seqlogo pwm
updated 9.2 years ago by 700 • written 9.2 years ago by • 0
0
votes
0
replies
1.2k
views
maxScore calculation for 'log2probratio' and 'prob' type PWMs
biostrings pwm
9.4 years ago Stefanie Tauber ▴ 40
0
votes
3
replies
2.0k
views
motif scanning using position frequncy matrix of motif in a given set of DNAstringset sequnces?.
motifdb matchpwm motif pwmenrich pwm
10.2 years ago vinod.acear ▴ 50
7 results • Page 1 of 1
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Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Martin Morgan 25k
I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
Given that this is an issue with BiocParallel on your machine and we have a minimal reproducible example, you may want to repost the issue.…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0
Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…
Answer: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0
Still happening in a clean install
Comment: limpa analysis advice by Gordon Smyth 53k
Yes, we use Astral currently. The main dataset in the limpa preprint is Astral. I don't see any major problems with your data and I think …
Votes
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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