Showing : pwm • reset
2
votes
2
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971
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universalmotif, question about enrich_motifs function and number of hits returned
universalmotif scanning enrich_motifs PWM
2.8 years ago alexandre.blais ▴ 50
2
votes
0
replies
1.9k
views
motifDb PFM vs JASPAR database PFM: conversion to PWM
pwm pfm jaspar motifdb
updated 5.9 years ago by 0 • written 6.0 years ago by ▴ 50
0
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0
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921
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Plotting motif enrichment vs background - Jaspar core vertebrates
pwm motifs jaspar meme motif analysis
6.0 years ago rbronste ▴ 60
2
votes
1
reply
2.5k
views
Error: unable to find an inherited method for function searchSeq for signature matrix
pwm tfbstools jaspar
updated 7.2 years ago by ▴ 20 • written 7.2 years ago by ▴ 50
0
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1
reply
1.4k
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PWM with columns that add up to 1
biostrings seqlogo pwm
updated 8.0 years ago by 700 • written 8.0 years ago by • 0
0
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0
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966
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maxScore calculation for 'log2probratio' and 'prob' type PWMs
biostrings pwm
8.2 years ago Stefanie Tauber ▴ 40
0
votes
3
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1.6k
views
motif scanning using position frequncy matrix of motif in a given set of DNAstringset sequnces?.
motifdb matchpwm motif pwmenrich pwm
9.0 years ago vinod.acear ▴ 50
7 results • Page 1 of 1
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Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by rcreed • 0
The updated version worked well on my data. Thank you!
Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k
The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Votes
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
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