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qc
•
reset
2
votes
4
replies
3.6k
views
ERROR - Size factors should be positive real numbers (using normalize() function)
scater
scran
singlecellexperiment
normalize
qc
updated 2.1 years ago by
Dayme
• 0 • written 5.1 years ago by
kushshah
▴ 10
0
votes
0
replies
463
views
Z' factor in high throughput screening assays
HTS
QC
updated 4.2 years ago by
shepherl
3.8k • written 4.2 years ago by
Happyflower
• 0
0
votes
7
replies
1.8k
views
Issue with flowAI and flow_auto_qc
flowAI
flow_auto_qc
QC
flow cytometry
updated 4.5 years ago by
gianni
• 0 • written 4.5 years ago by
vinko.tosevski
• 0
2
votes
2
replies
1.3k
views
ChIPQC gives Bam file has 297 contigs Error: subscript contains out-of-bounds indices
ChIP-seq
ChIPQC
QC
updated 4.7 years ago by
zhenfeng.liu1
▴ 20 • written 5.2 years ago by
star
▴ 10
2
votes
1
reply
1.3k
views
Bioconductor with RPKM counts or Raw counts
singlecellexperiment
rpkm
normalization
qc
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
kushshah
▴ 10
0
votes
2
replies
1.4k
views
Quality control for Affymetrix GeneChip Mouse Gene 2.0 ST Array
qc
qualitycontrol
arrayqualitymetrics
mouse gene st 2.0
affymetrix
updated 6.7 years ago by
James W. MacDonald
65k • written 6.7 years ago by
n.lu
• 0
0
votes
3
replies
1.6k
views
Error , about QC() !!!
qc
updated 8.5 years ago by
James W. MacDonald
65k • written 8.5 years ago by
libya.tahani
• 0
3
votes
1
reply
3.2k
views
creating custom genome annotation for the ChIPQC package
ChIPSeq
QC
ChIPQC
updated 8.7 years ago by
Thomas Carroll
▴ 420 • written 8.7 years ago by
Philip Lijnzaad
▴ 160
1
vote
3
replies
2.0k
views
QC probes in HTA2-0
affy
qc
simpleaffy
HTA
updated 9.1 years ago by
James W. MacDonald
65k • written 9.1 years ago by
Guilherme Rocha
▴ 40
0
votes
0
replies
1.2k
views
beadarray - QC file loads but doesn't appear in ExpressionSetIllumina object
beadarray
qc
9.2 years ago
meeta.mistry
▴ 30
3
votes
4
replies
3.6k
views
Quality filtering of exactSNP-generated VCF files
exactSNP
qc
variantannotation
updated 9.5 years ago by
Wei Shi
★ 3.6k • written 9.5 years ago by
daniel.silvestre
▴ 100
11 results • Page
1 of 1
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Replies
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Comment: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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Rory Stark
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tangming2005
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