Showing : rankprod • reset
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Shifted volcano plot after RankProd
rankp RankProd
2.0 years ago Alessia • 0
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3
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How can I run a paired RankProd analysis in R?
RankProd paired RNAseq R
updated 5.5 years ago by 68k • written 5.5 years ago by • 0
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RankProd RP function length error
rankprod rp gr2
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
3
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2
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1.4k
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RankProd throws "is.infinite(data)" error for type "S4" for differential expression analysis
rankprod limma affy bioconductor microarray
updated 7.8 years ago by 68k • written 7.8 years ago by ▴ 20
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2.0k
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RankProd crashing - stability issues?
rankprod crash
7.9 years ago bhgyu ▴ 30
4
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2.9k
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Bioconductor open source policy
licenses rankprod
updated 7.9 years ago by 68k • written 7.9 years ago by • 0
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Dual channel microarray statistics - Rankproducts did not calculate average FC in log scale.
Dual channel microarray Rankprod
8.2 years ago ggyu1215 • 0
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992
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How does specifying an origin increase the power when using RPadvance?
rankprod microarray bioconductor
8.8 years ago johnanthonyholtjr • 0
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Regarding the package RankProd
microarray rankprod
9.1 years ago sancharisircar24 • 0
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1.2k
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Problem using RankProd
rankprod
updated 9.6 years ago by 68k • written 9.6 years ago by • 0
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RankProd: simultaneously up and down regulated gene
RankProd differential gene expression
9.6 years ago horcsct ▴ 10
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Combine RankProd output Tables (up & down)
RankProd
9.6 years ago horcsct ▴ 10
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2.3k
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Error while running RankProd RPadvance from 2 origins - invalid 'row.names' length
rankprod microarray
9.8 years ago sumedharoy • 0
5
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2
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RankProd: Why are p-values=0?
rankprod p-value
updated 9.9 years ago by 68k • written 9.9 years ago by • 0
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Possible implementation of two class paired Rank Products in r with package RankProd
RankProd pairedtest bioconductor biologicalreplicates
10.0 years ago svlachavas ▴ 840
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Can Rank-production be applied to test the condition's effects on treatments?
RankProd RankProd
10.8 years ago Guest User ★ 13k
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1.6k
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1. comparing chip Information in meta analysis / Rankprod and 2. two color normalization
Normalization probe limma RankProd Normalization probe limma RankProd
updated 11.0 years ago by ▴ 30 • written 11.0 years ago by 52k
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1.9k
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1. comparing chip Information in meta analysis / Rankprod and 2. two color normalization
cdf RankProd cdf RankProd
updated 11.0 years ago by ▴ 30 • written 11.0 years ago by ▴ 190
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1. comparing chip Information in meta analysis / Rankprod and 2. two color normalization
RankProd RankProd
11.0 years ago Stefanie Busch ▴ 30
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GEOquerry and virtualArray
RankProd virtualArray RankProd virtualArray
updated 11.1 years ago by 68k • written 11.1 years ago by ▴ 30
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Rankprod- gene appearing in both up and down regulated lists?
RankProd RankProd
11.7 years ago Guest User ★ 13k
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Comparing human and mouse expression directly with RankProd
RankProd RankProd
12.3 years ago Cornwell, Adam ▴ 110
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RankProd absurd results
qPCR RankProd qPCR RankProd
12.4 years ago Guest User ★ 13k
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RankProd analysis for Agilent Single Color array ??
limma RankProd limma RankProd
12.5 years ago Guest User ★ 13k
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RankProd paired-sample analysis
RankProd RankProd
12.7 years ago Maider Muñoz ▴ 20
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RankProd package paired-sample sesign
RankProd RankProd
12.7 years ago Maider Muñoz ▴ 20
0
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1.3k
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meta-analysis with RankProd
RankProd RankProd
updated 13.2 years ago by ▴ 740 • written 13.2 years ago by ▴ 40
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1.5k
views
Help needed with topGene function of RankProd package
RankProd RankProd
updated 13.6 years ago by ★ 13k • written 13.6 years ago by ▴ 30
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Missing values - metaArray, GeneMeta, RankProd, metahdep
RankProd GeneMeta metaArray RankProd GeneMeta metaArray
13.7 years ago boczniak767 ▴ 740
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Gene IDs returned by RankProd topGene command
RankProd RankProd
15.1 years ago Blumenberg, Miroslav ▴ 30
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1.7k
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Query related to topGene functionality in RankProd library.
Cancer probe RankProd Cancer probe RankProd
updated 15.4 years ago by ▴ 20 • written 15.4 years ago by ▴ 20
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1.3k
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Query related to topGene functionality in RankProd library.
probe RankProd probe RankProd
15.4 years ago Rohan M ▴ 20
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1.2k
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Searching miRNA probe ids and annotating probe id lists
miRNA GO cdf probe affy RankProd miRNA GO cdf probe affy RankProd
updated 15.6 years ago by 21k • written 15.6 years ago by ▴ 10
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use of huex10stv2cdf_1.15.0.tar.gz and human exon array analysis
Annotation cdf limma RankProd Annotation cdf limma RankProd
updated 16.3 years ago by ▴ 70 • written 16.3 years ago by ▴ 190
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1.7k
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use of huex10stv2cdf_1.15.0.tar.gz and human exon array analysis
cdf limma RankProd cdf limma RankProd
updated 16.3 years ago by 68k • written 16.3 years ago by ▴ 70
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Rank Products- breast cancer
Cancer RankProd Cancer RankProd
16.9 years ago Eleni Christodoulou ▴ 150
0
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Error in RankProd package
limma RankProd limma RankProd
updated 18.1 years ago by ▴ 100 • written 18.1 years ago by ▴ 680
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meaning of pfp in RankProd
RankProd RankProd
18.2 years ago Matthew McCormack ▴ 180
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help with RankProd plaase
GO Survival cdf genefilter multtest affy limma RankProd Category affycoretools GO cdf
18.5 years ago Kimpel, Mark W ▴ 890
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1.6k
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Wilcoxon test [was loged data or not loged previous to use normalize.quantile]
Microarray limma RankProd Microarray limma RankProd
updated 20.1 years ago by ▴ 340 • written 20.1 years ago by 52k
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A new package: RankProd
RankProd RankProd
20.1 years ago Fangxin Hong ▴ 810
41 results • Page 1 of 1
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Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file by janwilseo • 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender by donnycrimson • 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Votes
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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