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14
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2.7k
views
RBGL 1.8.1 installation error on linux
Cancer graph RBGL Cancer graph RBGL
updated 17.9 years ago by ▴ 510 • written 18.0 years ago by ▴ 300
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6
replies
1.4k
views
Many missing GO terms from GOHyperG call using mgu74av2
GO Survival hgu95av2 mgu74av2 Ruuid annotate multtest affy graph annaffy RBGL GOstats
updated 18.8 years ago by ★ 7.4k • written 18.8 years ago by ★ 1.4k
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14
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2.5k
views
GOStats/RBGL installation error
RBGL GOstats RBGL GOstats
updated 16.5 years ago by ▴ 170 • written 16.5 years ago by ▴ 260
0
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6
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2.0k
views
Problems building RBGL package
RBGL RBGL
15.9 years ago • updated 15.8 years ago Rasmus Ory Nielsen ▴ 50
0
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11
replies
2.7k
views
trouble hacking plotPCA
GO Survival Biobase genefilter affy affydata graph limma gcrma matchprobes affyPLM RBGL
updated 17.4 years ago by ▴ 10 • written 17.4 years ago by ★ 2.2k
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3
replies
1.7k
views
RBGL fails to compile / install
RBGL GOstats RBGL GOstats
updated 14.3 years ago by ★ 7.4k • written 14.3 years ago by ▴ 630
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5
replies
1.5k
views
error coercing an exprSet to ExpressionSet
GO cdf Biobase annotate multtest affy limma RBGL GOstats Category affycoretools GO cdf
updated 17.5 years ago by ★ 7.4k • written 17.5 years ago by ▴ 890
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3
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1.2k
views
Recent changes to Bioconductor packages
Biobase Ruuid DynDoc tkWidgets affy graph Rgraphviz AnnBuilder RBGL PROcess Biobase
21.1 years ago • updated 21.0 years ago madman@jimmy.harvard.edu ▴ 850
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2
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1.0k
views
error with GOHyperG
drosophila2 cdf Biobase annotate genefilter multtest RBGL GOstats drosophila2 cdf RBGL
updated 17.7 years ago by ★ 7.4k • written 17.7 years ago by ▴ 10
0
votes
4
replies
1.5k
views
RBGL installation issues
RBGL GOstats RBGL GOstats
updated 15.6 years ago by ▴ 510 • written 15.6 years ago by ▴ 930
0
votes
2
replies
1.2k
views
Issues while installing RBGL package
RBGL RBGL
updated 11.2 years ago by 6.7k • written 11.2 years ago by ▴ 10
0
votes
2
replies
1.1k
views
where can I find the GO and xtable package?
GO Biobase annotate genefilter graph RBGL GOstats GO Biobase annotate genefilter graph
updated 19.7 years ago by ★ 5.5k • written 19.7 years ago by ▴ 320
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votes
2
replies
1.3k
views
problem with latest version of graph
GO annotate genefilter multtest affy graph Rgraphviz RBGL GOstats affyio affycoretools
17.9 years ago Kimpel, Mark W ▴ 890
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5
replies
2.0k
views
'citation("RBGL")' command produces package not found error
RBGL RBGL
updated 11.9 years ago by 6.7k • written 11.9 years ago by ▴ 30
0
votes
2
replies
1.6k
views
can't load affycoretools because GOstats is broken. Can I load affycoretools without dependencies to use some functions?
GO Survival Biobase genefilter affy limma RBGL GOstats Category affyio affycoretools GO
17.2 years ago Mark W Kimpel ▴ 830
0
votes
2
replies
1.3k
views
pathway analysis package
RBGL KEGGSOAP RBGL KEGGSOAP
updated 19.4 years ago by 21k • written 19.4 years ago by ▴ 60
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votes
3
replies
2.0k
views
hyperGTest, KEGG
Annotation Pathways multtest siggenes RBGL GOstats Annotation Pathways multtest siggenes
updated 17.1 years ago by ★ 7.4k • written 17.1 years ago by ▴ 80
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votes
4
replies
1.3k
views
error with AffyQCReport
cdf annotate affy limma RBGL simpleaffy GOstats affyQCReport cdf annotate affy limma
updated 17.2 years ago by ★ 13k • written 17.2 years ago by ▴ 830
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votes
1
reply
1.1k
views
Problem with limma2biomaRt and MBNI custom CDF
Annotation GO cdf DynDoc genefilter tkWidgets affy graph limma RBGL biomaRt Category
updated 17.2 years ago by 65k • written 17.2 years ago by ▴ 300
0
votes
1
reply
891
views
rbind in annaffy problem
GO hgu95av2 rat2302 cdf annotate affy graph annaffy RBGL GOstats biomaRt GO hgu95av2
updated 18.4 years ago by 65k • written 18.4 years ago by ▴ 890
0
votes
2
replies
1.2k
views
affycoretools vennSelect problem
GO Survival annotate genefilter affy graph gcrma annaffy RBGL GOstats biomaRt affyio
updated 15.9 years ago by 65k • written 15.9 years ago by ▴ 30
0
votes
4
replies
1.9k
views
installation problem
Ruuid genefilter rhdf5 multtest affy graph Rgraphviz RBGL Ruuid genefilter rhdf5 affy
updated 20.6 years ago by 6.7k • written 20.6 years ago by ▴ 30
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votes
1
reply
1.3k
views
[R] problem loading affycoretools - solved!
Biobase Ruuid genefilter multtest graph limma gcrma matchprobes affyPLM RBGL simpleaffy
updated 17.7 years ago by ★ 7.4k • written 17.7 years ago by ★ 2.2k
0
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4
replies
1.8k
views
problem on install package RBGL
RBGL RBGL
updated 14.5 years ago by ▴ 510 • written 14.5 years ago by ▴ 60
0
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1
reply
1.3k
views
CRAN packages maintained by you
hexbin gpls RBGL impute Icens hopach maanova RLMM CORREP cycle hexbin gpls RBGL Icens
updated 12.5 years ago by ▴ 430 • written 12.5 years ago by ▴ 10
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1
reply
1.6k
views
deprecated head file for RBGL and compilation failure
graph RBGL PROcess graph RBGL PROcess
updated 12.0 years ago by 6.7k • written 12.0 years ago by ★ 13k
0
votes
1
reply
741
views
johnson.all.pairs.sp (RBGL) causes R to hang with certain graphs
graph RBGL graph RBGL
updated 18.0 years ago by ▴ 50 • written 18.0 years ago by ★ 7.4k
0
votes
6
replies
3.5k
views
Directed MST (Edmond's Algorithm)
GO graph RBGL GO graph RBGL
updated 10.5 years ago by ★ 13k • written 10.5 years ago by ▴ 90
0
votes
1
reply
1.2k
views
RE: Bioconductor Digest, Vol 8, Issue 15
Microarray Clustering Cancer affy graph SAGElyzer Rgraphviz Rdbi RBGL Microarray Cancer
updated 20.6 years ago by ▴ 180 • written 20.6 years ago by ▴ 160
3
votes
2
replies
2.5k
views
Finding nearest neighbors of given hub gene in a co-expression network module
wgcna rbgl graph coexpression hub genes
updated 8.1 years ago by ★ 3.0k • written 8.1 years ago by ▴ 150
1
vote
4
replies
1.2k
views
Non-Redundant Edges in Connected Components
RBGL
updated 5.9 years ago by 16k • written 5.9 years ago by ★ 1.5k
2
votes
4
replies
1.9k
views
Problems installing RBGL in R
rbgl r package problem
updated 5.4 years ago by 25k • written 5.4 years ago by ▴ 20
1
vote
2
replies
844
views
Unable to install RBGL in Bioconductor 3.10 release
rbgl bh
updated 4.5 years ago by 25k • written 4.5 years ago by ▴ 90
2
votes
4
replies
4.6k
views
Unable to upload an App in shinyapps.io with bioconductor packages
shinny graph RBGL
updated 13 months ago by ▴ 10 • written 3.2 years ago by • 0
0
votes
1
reply
970
views
Trouble Loading RBGL
RBGL RBGL
updated 19.6 years ago by ★ 3.9k • written 19.6 years ago by ▴ 110
0
votes
1
reply
864
views
RBGL package
RBGL RBGL
updated 18.0 years ago by ★ 7.4k • written 18.0 years ago by ▴ 10
0
votes
3
replies
2.0k
views
Situation of the legend in the plotPCA of the affycoretools library
GO Survival cdf annotate genefilter multtest affy graph limma RBGL GOstats Category GO
updated 17.6 years ago by 65k • written 17.6 years ago by ▴ 350
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votes
2
replies
1.6k
views
problem with hist.default in affystart in package affycoretools
GO cdf annotate affy limma RBGL simpleaffy GOstats Category affyQCReport affyio GO cdf
updated 17.4 years ago by 65k • written 17.4 years ago by ▴ 890
0
votes
6
replies
1.6k
views
GOstats and custom annotation problem
Annotation GO annotate genefilter graph AnnBuilder RBGL GOstats Category Annotation GO
updated 17.3 years ago by 21k • written 17.3 years ago by ▴ 310
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votes
0
replies
516
views
Removing edges from a complete graph to make it a planar maximally filtered graph
RBGL
2.2 years ago jackson0696 • 0
2
votes
11
replies
2.1k
views
RBGL installation error
rbgl
8.0 years ago Julian Gehring ★ 1.3k
0
votes
0
replies
973
views
RBGL 1.2.2 compilation problem
RBGL RBGL
19.6 years ago Roels, Steven ▴ 50
0
votes
0
replies
660
views
Graph Layout
graph RBGL graph RBGL
18.2 years ago Li Long ▴ 120
0
votes
0
replies
996
views
RBGL, shortest paths, edge weights, and the new graph class
SystemsBiology graph RBGL SystemsBiology graph RBGL
18.0 years ago Seth Falcon ★ 7.4k
0
votes
0
replies
744
views
R hangs when applying johnson.all.pairs.sp (in library RBGL) to some graphs
graph RBGL graph RBGL
17.9 years ago Li.Long@isb-sib.ch ▴ 510
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votes
0
replies
1.1k
views
blocking in limma gives an estimability problem
GO hgu95av2 Ruuid multtest affy graph limma RBGL qvalue Category affyio GO hgu95av2
17.9 years ago Pedro López Romero ▴ 360
0
votes
0
replies
834
views
RBGL installation on Ubuntu 6.10
RBGL RBGL
17.4 years ago lgautier@altern.org ▴ 950
0
votes
0
replies
1.1k
views
affy u133x3p chip
Microarray Genetics GO Preprocessing Cancer CGH cdf probe annotate genefilter affy RBGL
17.1 years ago Dick Beyer ★ 1.4k
0
votes
0
replies
1.1k
views
RBGL: bfs & dfs with directed graphs
GO Biobase annotate geneplotter graph Rgraphviz annaffy RBGL convert GO Biobase graph
17.1 years ago stephen edwards ▴ 10
0
votes
0
replies
939
views
Problems with k-cliq definition and calculations using RBGL package
Proteomics graph RBGL Proteomics graph RBGL
16.5 years ago Chanchal Kumar ▴ 130
50 results • Page 1 of 1
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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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