Showing : rcy3 • reset
1
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866
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KEGGgraph result difference
igraph KEGGgraph RCy3 GraphNEL
15 months ago • updated 14 months ago Arindam ▴ 80
2
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2
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1.3k
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Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(paste("networks", net.suid, "tables", tbl, sep = "/"), : object 're…
RCy3
19 months ago Matthew Thornton ▴ 390
1
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1
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714
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Going back to default settings in RCy3
Cytoscape RCy3 RCy
updated 23 months ago by ▴ 30 • written 2.0 years ago by ▴ 90
1
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1
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1.5k
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How to select subnetworks, or regions, with a certain number of nodes or edges with RCy3
Network RCy3
updated 23 months ago by ▴ 30 • written 2.0 years ago by ▴ 90
1
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1
reply
1.3k
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Cytohubba in RCY3
RCy3 Cytohubba
updated 23 months ago by ▴ 30 • written 24 months ago by ▴ 10
3
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7
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2.5k
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"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape RCy3 Networkvisualization WGCNA
2.6 years ago Ortega-C ▴ 10
1
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1
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1.3k
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how to call an app from Cytoscape using R?
RCy3
updated 2.9 years ago by ▴ 30 • written 2.9 years ago by ▴ 40
2
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3
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2.3k
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Aggregating genes from multiple GSE's, ranking them, then building a PPI network.
GEOquery CancerData limma RCy3 CancerInSilico
updated 4.1 years ago by ★ 13k • written 4.1 years ago by ▴ 50
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2
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1.5k
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RCy3 Cytoscape package question
rcy3
updated 5.0 years ago by ▴ 30 • written 6.0 years ago by ▴ 10
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3
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1.9k
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loadTableData function from RCy3 returns "Failed to load data: Provided key columns do not contain any matches"
Cytoscape Pathways Wikipathways rWikiPathways RCy3
5.0 years ago Emilia ▴ 40
0
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1
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1.2k
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Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3 Cytoscape R Newick Bioconductor
updated 5.0 years ago by ▴ 30 • written 5.4 years ago by • 0
3
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4
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2.1k
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Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
6.6 years ago Matthew Thornton ▴ 390
12 results • Page 1 of 1
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Comment: DESeq2 on non-RNASeq counts data by TikTsokaasocissalpc • 0
In data analysis, behavior differences based on data type are common. Similarly, Best EDI Software adapts to non-standard transaction volum…
Comment: blockwiseModule crashes in the end and doesn't generate modules by gexose2839 • 0
Sounds good. @[time][1] [1]: https://timeduration.github.io
Comment: PFAM formats changed - is it still possible to use this with ISA? by TikTsokaasocissalpc • 0
For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…
Answer: segfault in edgeR glmQLFit by Gordon Smyth 53k
Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. The prob…
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by aqeel • 0
Discover the pinnacle of Brazilian Jiu Jitsu gear at [Dragon][1] GI. [1]: https://dragongi.com/
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C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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