Bioconductor Rcy3

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Cytoscape RCy3 RCy

updated 3 months ago by alex.pico ▴ 20 • written 4 months ago by David R ▴ 90

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824

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Network RCy3

updated 3 months ago by alex.pico ▴ 20 • written 4 months ago by David R ▴ 90

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289

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RCy3 Cytohubba

updated 3 months ago by alex.pico ▴ 20 • written 4 months ago by jzhan067 ▴ 10

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1.2k

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Cytoscape RCy3 Networkvisualization WGCNA

11 months ago Ortega-C ▴ 10

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585

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RCy3

updated 15 months ago by alex.pico ▴ 20 • written 15 months ago by adR ▴ 30

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1.3k

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GEOquery CancerData limma RCy3 CancerInSilico

updated 2.4 years ago by Steve Lianoglou ★ 13k • written 2.4 years ago by Caitlin ▴ 50

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857

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rcy3

updated 3.3 years ago by alex.pico ▴ 20 • written 4.3 years ago by hanna226613 ▴ 10

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1.3k

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Cytoscape Pathways Wikipathways rWikiPathways RCy3

3.4 years ago • updated 3.3 years ago Emilia ▴ 30

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728

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RCy3 Cytoscape R Newick Bioconductor

updated 3.3 years ago by alex.pico ▴ 20 • written 3.8 years ago by ellisjc • 0

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1.4k

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RCy3 Cytoscape Rgraphviz GOstats

5.0 years ago • updated 4.9 years ago Matthew Thornton ▴ 350

10 results • Page 1 of 1

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Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by shuwangxinze1996 • 0

Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough?

Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k

This comment helps.

Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k

I am not sure how your comment helps here?

Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by Michael Love 41k

> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …

Votes

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

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Supporter to JKim • 0