Showing : regression • reset
11
votes
3
replies
1.1k
views
Fit a multinomial to RNA-seq count data
voom limma glm multinomial regression
updated 5.8 years ago by ★ 2.9k • written 5.8 years ago by ▴ 100
8
votes
3
replies
5.4k
views
Removing batch effects with sva and combat using the sva package
Regression limma sva Regression limma sva
updated 10.4 years ago by ▴ 60 • written 10.4 years ago by ▴ 610
6
votes
7
replies
1.3k
views
Multi-level experiment with limma
limma design and contrast matrix differential gene expression regression
updated 4.9 years ago by ★ 27k • written 4.9 years ago by • 0
4
votes
3
replies
398
views
Diffbind for regressing multiple confounding variables (blocking factors)
diffbind block regression deseq2 chipseq
updated 18 months ago by ★ 4.4k • written 2.6 years ago by ▴ 10
3
votes
0
replies
2.1k
views
Evidence-based guidelines for use the method="robust" option in lmFit
Microarray Normalization Bayesian Regression Cancer limma Microarray Normalization Cancer
11.0 years ago Richard Friedman ★ 2.0k
3
votes
3
replies
770
views
Limma - Two-color group differences *and* correlation with individual differences.
limma regression
updated 5.3 years ago by 45k • written 5.3 years ago by ▴ 30
3
votes
4
replies
838
views
Limma when to use zero intercept
limma regression differential expression linear model
updated 2.3 years ago by 45k • written 2.3 years ago by • 0
2
votes
4
replies
158
views
Overfitting in limma
limma Regression overfitting
updated 14 days ago by 45k • written 20 days ago by • 0
2
votes
2
replies
1.7k
views
[limma] [Rfit] [samr] Gene expression distribution using lmFit and eBayes
Microarray Regression Microarray Regression
updated 8.5 years ago by 45k • written 8.5 years ago by ▴ 30
2
votes
5
replies
14k
views
Limma design and contrast matrix question.
Microarray Regression limma Microarray Regression limma
updated 8.3 years ago by 59k • written 8.3 years ago by ▴ 350
2
votes
23
replies
2.1k
views
Coping with a label/class imbalance in DESeq2
deseq2 rnaseq r regression
updated 5.7 years ago by 37k • written 5.7 years ago by • 0
1
vote
2
replies
372
views
EdgeR -- differentially expressed genes across a continuous variable
edger continuous regression
updated 3.3 years ago by 59k • written 3.3 years ago by • 0
1
vote
1
reply
199
views
limma: pvalues for coefficients topTable
TimeSeriesExperiment Regression top limma
updated 9 months ago by 59k • written 9 months ago by • 0
1
vote
2
replies
2.7k
views
Kernel Ridge Regression in R for Drug-Target Interaction
regression kernel ridge r
updated 5.7 years ago by • 0 • written 6.1 years ago by • 0
1
vote
1
reply
6.5k
views
[LIMMA]lmFit with continuous predictor
Regression limma Regression limma
updated 9.9 years ago by ▴ 130 • written 9.9 years ago by ▴ 210
1
vote
3
replies
1.4k
views
limma report logFC confidence interval?
Regression limma Regression limma
updated 11 months ago by 45k • written 11.3 years ago by ▴ 40
1
vote
5
replies
1.3k
views
deseq2 normalized data
regression deseq2 counts
updated 6.7 years ago by 37k • written 6.7 years ago by • 0
0
votes
7
replies
924
views
M vs A plot
Microarray Normalization Regression Cancer marray Microarray Normalization Regression
updated 18.3 years ago by ★ 6.0k • written 18.3 years ago by ★ 2.0k
0
votes
1
reply
833
views
question about limma fit differences?
Regression limma Regression limma
updated 18.3 years ago by 45k • written 18.3 years ago by ▴ 20
0
votes
3
replies
919
views
GCRMA: feature request
GO Regression probe gcrma frma GO Regression probe gcrma frma
updated 11.4 years ago by ▴ 250 • written 11.4 years ago by ★ 3.2k
0
votes
1
reply
488
views
mean versus linear model?
Regression limma Regression limma
updated 18.4 years ago by ★ 6.0k • written 18.4 years ago by ▴ 340
0
votes
0
replies
602
views
Re: limma linear model [was: (no subject)]
Regression Regression
17.6 years ago karen ▴ 30
0
votes
0
replies
583
views
limma linear model [was: (no subject)]
Regression Regression
17.6 years ago Gordon Smyth 45k
0
votes
0
replies
762
views
Conference announcement: Compstat 2004
Visualization Bayesian Classification Clustering Regression Visualization Bayesian
18.6 years ago Wolfgang Huber 13k
0
votes
0
replies
739
views
Confusion over limma documentation and design/contrast matrix
GO Regression limma GO Regression limma
17.5 years ago Gordon Smyth 45k
0
votes
0
replies
792
views
Confusion over limma documentation and design/contrast matrix
GO Regression limma GO Regression limma
17.5 years ago michael watson IAH-C ★ 3.4k
0
votes
1
reply
1.5k
views
Dose-Response: Regressiion and ANOVA
Regression DOSE Regression DOSE
updated 17.4 years ago by ▴ 360 • written 17.4 years ago by ▴ 620
0
votes
0
replies
471
views
Gene selection: association with linear response and correction for multi test
Regression limma siggenes Regression limma siggenes
17.1 years ago david neil hayes ▴ 70
0
votes
2
replies
2.9k
views
multtest and Cox regression
Regression multtest Regression multtest
updated 17.1 years ago by ▴ 10 • written 17.1 years ago by ▴ 140
0
votes
0
replies
2.2k
views
Cox MTP question
Microarray Regression multtest Microarray Regression multtest
17.1 years ago kpollard ▴ 110
0
votes
0
replies
1.0k
views
qPCR Event Calendar - winter 2010
SNP qPCR Genetics Normalization Clustering Regression Cancer Breast Xenopus laevis probe
11.5 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
5
replies
714
views
limma question: direct two-color design & modeling individual subject effects
SystemsBiology Regression probe limma SystemsBiology Regression probe limma
updated 15.1 years ago by ★ 1.1k • written 15.1 years ago by 45k
0
votes
0
replies
437
views
re: Loess
Regression Regression
17.6 years ago David Lee Duewer ▴ 40
0
votes
0
replies
808
views
Unexpected results using limma with numerical factor - regression intercept?
GO Regression limma convert GO Regression limma convert
17.8 years ago Gordon Smyth 45k
0
votes
0
replies
542
views
Off topic: predoctoral grant
Regression Survival Cancer Regression Survival Cancer
18.7 years ago Ramon Diaz ★ 1.1k
0
votes
0
replies
672
views
RE: Design matrix with multiple genotypes + quantified variables (+cor/regression)
Regression limma Regression limma
17.8 years ago Gordon Smyth 45k
0
votes
0
replies
338
views
Reference on linear models [was LIMMA makeContrasts question]
Regression limma Regression limma
15.5 years ago Gordon Smyth 45k
0
votes
0
replies
614
views
tricky batch problem
Metabolomics Regression Metabolomics Regression
15.5 years ago E. Schwarz ▴ 10
0
votes
0
replies
850
views
Unexpected results using limma with numerical factor - regression intercept?
GO Regression limma GO Regression limma
17.8 years ago Matthew Hannah ▴ 940
0
votes
0
replies
535
views
p-value adjustment when two or more genes are compared at same time
Regression Cancer multtest Regression Cancer multtest
18.8 years ago Jason Liao ▴ 10
0
votes
0
replies
498
views
Reference on linear models
Regression limma Regression limma
15.5 years ago Katherine Lawler ▴ 10
0
votes
0
replies
690
views
Course*** R/S+: Fundamentals and Programming Techniques - Princeton, March 1-2
Microarray Classification Clustering Regression Microarray Classification Clustering
15.3 years ago sue@xlsolutions-corp.com ▴ 570
0
votes
0
replies
522
views
9 Courses: Upcoming July 2007 R/S+ schedule by XLSolutions Corp
Regression Regression
15.0 years ago sue@xlsolutions-corp.com ▴ 570
0
votes
0
replies
526
views
Regressions in multtest
Regression Regression
14.9 years ago Benjamin Otto ▴ 830
0
votes
0
replies
774
views
Pvalue permutation of Linear regression
Regression Regression
14.9 years ago Benjamin Otto ▴ 830
0
votes
1
reply
664
views
batch effects and VSN
Normalization Regression vsn limma oligo Normalization Regression vsn limma oligo
updated 14.7 years ago by 13k • written 14.7 years ago by ▴ 330
0
votes
1
reply
911
views
Bioconductor 2.1 is released
SNP Microarray SAGE Annotation Bayesian Regression GUI CGH hgu95av2 graph Rgraphviz SNP
14.6 years ago Hervé Pagès 15k
0
votes
4
replies
1.6k
views
How to create nested data frames
Regression Regression
14.6 years ago Ana Conesa ▴ 130
0
votes
0
replies
869
views
NEW deadline - Talk & Poster Call - qPCR 2009 Event
SNP qPCR Normalization Visualization Regression Cancer probe microRNA SNP qPCR Cancer
13.4 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
0
replies
784
views
qPCR 2009 Event Agenda Online
SNP qPCR Normalization Visualization Regression Cancer probe microRNA SNP qPCR Cancer
13.3 years ago qPCR Platform - the reference in real-t… ▴ 170
50 results • Page 1 of 1
Recent ...
Replies
Comment: Error in h(simpleError(msg, call)) : when calling makeOrgPackagefromNCBI() by Lan Anh • 0
Hello, Sorry for the late answer, I called several packages after my error and I do not know how it worked after that. Thank you for the h…
Comment: LogFC values in edgeR - w/wo intercept by JK Kim • 0
Thanks, Dr. Smyth!
Comment: LogFC values in edgeR - w/wo intercept by JK Kim • 0
Oops. I just corrected the URL. Thank you Dr. Smyth.
Comment: Fail to run RupRadar by Qingwei • 0
Dear Sergi, Yeah, it works. ```r dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads, GTF.featureType="cDNA_match", GTF.attrType="ID…
Comment: LogFC values in edgeR - w/wo intercept by Gordon Smyth 45k
The link you've entered for "A guide to creating design matrices for gene expression experiments" doesn't work. Could you please correct th…
Votes
Comment: LogFC values in edgeR - w/wo intercept
Answer: LogFC values in edgeR - w/wo intercept
Answer: LogFC values in edgeR - w/wo intercept
Answer: broken chain import in liftOver
Answer: toGRanges help!
Awards • All
Scholar to Gordon Smyth 45k
Popular Question to JK Kim • 0
Popular Question to svlachavas ▴ 780
Scholar to Guido Hooiveld ★ 3.2k
Teacher to Aaron Lun ★ 27k
Locations • All
United Kingdom, 7 minutes ago
United States, 43 minutes ago
Nepal, 1 hour ago
Australia, 1 hour ago
Japan, 1 hour ago
Traffic: 274 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6