Showing : regression • reset
0
votes
2
replies
214
views
WGCNA: analysis of complex trait associations with regressions
Regression WGCNA
28 days ago • updated 23 days ago w.cookson • 0
5
votes
25
replies
825
views
limma models out of memory issue on Slurm HPC
Regression limma STATISITICS HPC
updated 21 days ago by 50k • written 4 weeks ago by ▴ 10
0
votes
0
replies
219
views
multipollutant models
statistics Regression r limma
4 months ago Jitendra ▴ 10
2
votes
4
replies
1.1k
views
Overfitting in limma
limma Regression overfitting
updated 23 months ago by 50k • written 24 months ago by ▴ 30
1
vote
1
reply
802
views
limma: pvalues for coefficients topTable
TimeSeriesExperiment Regression top limma
updated 2.7 years ago by 65k • written 2.7 years ago by • 0
4
votes
3
replies
990
views
Diffbind for regressing multiple confounding variables (blocking factors)
diffbind block regression deseq2 chipseq
updated 3.5 years ago by ★ 5.2k • written 4.5 years ago by ▴ 10
0
votes
1
reply
560
views
Which Package Should I Use to Predict Model Output Using RNA Seq Data?
regression
updated 3.8 years ago by 50k • written 3.8 years ago by • 0
7
votes
4
replies
4.1k
views
Limma when to use zero intercept
limma regression differential expression linear model
updated 4.2 years ago by 50k • written 4.2 years ago by • 0
1
vote
2
replies
780
views
EdgeR -- differentially expressed genes across a continuous variable
edger continuous regression
updated 5.2 years ago by 65k • written 5.2 years ago by • 0
6
votes
7
replies
2.1k
views
Multi-level experiment with limma
limma design and contrast matrix differential gene expression regression
updated 6.8 years ago by ★ 28k • written 6.8 years ago by • 0
3
votes
3
replies
1.2k
views
Limma - Two-color group differences *and* correlation with individual differences.
limma regression
updated 7.2 years ago by 50k • written 7.2 years ago by ▴ 30
1
vote
2
replies
3.4k
views
Kernel Ridge Regression in R for Drug-Target Interaction
regression kernel ridge r
updated 7.6 years ago by • 0 • written 8.0 years ago by • 0
2
votes
23
replies
3.5k
views
Coping with a label/class imbalance in DESeq2
deseq2 rnaseq r regression
updated 7.6 years ago by 41k • written 7.6 years ago by • 0
11
votes
3
replies
1.7k
views
Fit a multinomial to RNA-seq count data
voom limma glm multinomial regression
updated 7.8 years ago by ★ 3.3k • written 7.8 years ago by ▴ 110
1
vote
5
replies
1.8k
views
deseq2 normalized data
regression deseq2 counts
updated 8.6 years ago by 41k • written 8.6 years ago by • 0
0
votes
1
reply
994
views
GWASTools: quasi-/perfect linear separation
Regression
updated 9.6 years ago by ▴ 870 • written 9.6 years ago by ★ 13k
0
votes
2
replies
2.0k
views
UCSC data anomaly in 50638 transcript(s): the cds cumulative length is
Genetics GO Regression Cancer TranscriptDb Genetics GO Regression Cancer TranscriptDb
updated 9.9 years ago by ▴ 570 • written 9.9 years ago by 16k
0
votes
1
reply
1.5k
views
Choosing the kernel for SVM (regression) using rminer package
Regression Regression
updated 10.1 years ago by ★ 13k • written 10.1 years ago by ★ 13k
0
votes
1
reply
1.5k
views
Support vector regression
Classification Regression Classification Regression
updated 10.1 years ago by ★ 13k • written 10.1 years ago by ★ 13k
0
votes
0
replies
1.5k
views
Data Analysis for Genomics, free HarvardX course, starts April 7
Regression Regression
10.1 years ago Michael Love 41k
0
votes
4
replies
2.5k
views
DESeq2 high fold change values for comparison of samples with zero counts
Regression DESeq DESeq2 Regression DESeq DESeq2
updated 10.2 years ago by 41k • written 10.2 years ago by ▴ 60
0
votes
3
replies
8.9k
views
ggplot2 error
Regression Regression
10.2 years ago Alyaa Mahmoud ▴ 440
2
votes
5
replies
15k
views
Limma design and contrast matrix question.
Microarray Regression limma Microarray Regression limma
updated 10.3 years ago by 65k • written 10.3 years ago by ▴ 350
0
votes
1
reply
1.6k
views
[MEDIPS] mergeFrames: `Error in rbind(output, cbind(chromosomes[i], new_start, new_stop)) `
Coverage Regression edgeR MEDIPS Coverage Regression edgeR MEDIPS
updated 10.3 years ago by ▴ 240 • written 10.3 years ago by ▴ 10
0
votes
2
replies
1.8k
views
[MEDIPS] Error in 1:max_signal_index : argument of length 0 - what does mean?
Preprocessing Regression MEDIPS Preprocessing Regression MEDIPS
updated 10.3 years ago by ▴ 570 • written 10.3 years ago by ▴ 20
0
votes
0
replies
1.7k
views
EdgeR Design matrix not of full rank. The following coefficients not estimable errorR
Regression edgeR Regression edgeR
10.3 years ago Gordon Smyth 50k
0
votes
0
replies
970
views
EdgeR Design matrix not of full rank. The following coefficients not estimable errorR
Regression edgeR Regression edgeR
10.3 years ago Eugene Bolotin ▴ 20
0
votes
1
reply
1.6k
views
[R] freetype 2.5.2, problem with the survival package, build R 2.15.x with gcc 4.8.x
Regression Survival snpStats Regression Survival snpStats
10.4 years ago David Winsemius ▴ 40
0
votes
0
replies
3.5k
views
Inquiries about fitType on DESeq2
Regression DESeq2 Regression DESeq2
10.4 years ago Michael Love 41k
2
votes
2
replies
2.2k
views
[limma] [Rfit] [samr] Gene expression distribution using lmFit and eBayes
Microarray Regression Microarray Regression
updated 10.4 years ago by 50k • written 10.4 years ago by ▴ 30
0
votes
3
replies
3.6k
views
lower.limits and upper.limits in glmnet
Regression Regression
updated 10.5 years ago by ▴ 60 • written 10.5 years ago by ▴ 370
0
votes
0
replies
1.4k
views
CfP: CAMDA 2013 - 12th International Conference on Critical Assessment of Massive Data Analysis
Genetics Classification Regression Genetics Classification Regression
11.0 years ago CAMDA 2013 ▴ 30
0
votes
0
replies
1.1k
views
CAMDA 2013 Challenge: Big Data in Life Sciences
Sequencing Microarray Genetics Classification Clustering Regression Sequencing Microarray
11.1 years ago CAMDA 2013 ▴ 30
0
votes
10
replies
2.4k
views
assignChromosomeRegion in 2.6.0 ChIPpeakAnno
Microarray Annotation GO Network Regression Survival Infrastructure Escherichia coli ROC
11.1 years ago Julie Zhu ★ 4.3k
0
votes
2
replies
4.2k
views
edgeR choose the best model of GLM
Regression edgeR Regression edgeR
updated 11.2 years ago by 50k • written 11.2 years ago by ▴ 40
0
votes
7
replies
1.7k
views
affy code archeology: expresso behavior for liwong/invariantset
Regression gcrma Regression gcrma
updated 11.2 years ago by 65k • written 11.3 years ago by ★ 13k
0
votes
1
reply
994
views
[R] lowess regression
Regression Regression
updated 11.6 years ago by ▴ 10 • written 11.6 years ago by ▴ 670
0
votes
0
replies
1.0k
views
lowess regression
Regression Regression
11.6 years ago Bogdan ▴ 670
1
vote
1
reply
7.1k
views
[LIMMA]lmFit with continuous predictor
Regression limma Regression limma
updated 11.8 years ago by ▴ 130 • written 11.8 years ago by ▴ 210
0
votes
3
replies
1.2k
views
edgeR and tagwise dispersion: overcorrection for multiple tests?
SAGE Regression edgeR BRAIN SAGE Regression edgeR BRAIN
updated 11.8 years ago by 25k • written 11.8 years ago by 50k
0
votes
0
replies
1.2k
views
edgeR and tagwise dispersion: overcorrection for multiple tests?
SAGE Regression edgeR BRAIN SAGE Regression edgeR BRAIN
11.8 years ago alessandro.guffanti@genomnia.com ▴ 330
0
votes
0
replies
1.1k
views
about edgeR
Regression Regression
11.8 years ago wang peter ★ 2.0k
0
votes
0
replies
1.5k
views
design and contrast matrix for limma time series without replicates
Microarray GO Regression limma Microarray GO Regression limma
11.9 years ago Chunxuan Shao ▴ 30
0
votes
0
replies
830
views
Outcome~predictor model evaluation, repeated measurements
Regression Regression
12.0 years ago rad mac ▴ 10
0
votes
0
replies
1.7k
views
edgeR-DeSeq - inconsistency between Variance and Coefficient of Variation
Regression edgeR DESeq Regression edgeR DESeq
12.1 years ago Gordon Smyth 50k
8
votes
3
replies
6.9k
views
Removing batch effects with sva and combat using the sva package
Regression limma sva Regression limma sva
updated 12.4 years ago by ▴ 60 • written 12.4 years ago by ▴ 650
0
votes
0
replies
1.2k
views
Use of glm for multivariate logistic regression of microarray data
Microarray Regression Microarray Regression
12.5 years ago Ruppert Valentino ▴ 270
0
votes
0
replies
751
views
Binomial regression of HTqPCR data
Regression HTqPCR Regression HTqPCR
12.5 years ago Christopher Howerton ▴ 40
0
votes
0
replies
897
views
Regression analysis using expression microarray to determine phenotypic correlation
Microarray Regression Microarray Regression
12.5 years ago Ruppert Valentino ▴ 270
0
votes
6
replies
1.4k
views
SNPcounts error in SNPlocs.Hsapiens.dbSNP.20110815_0.99.3 (i.e., my attempt to update SNPlocs to dbSNP build 134)
Regression SNPlocs Biostrings Regression SNPlocs Biostrings
updated 12.6 years ago by 6.7k • written 12.6 years ago by ★ 4.2k
50 results • Page 1 of 1
Recent ...
Replies
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Awards • All
Scholar to James W. MacDonald 65k
Supporter to JKim • 0
Popular Question to Gordon Smyth 50k
Popular Question to Chris • 0
Supporter to Jonathan ▴ 10
Locations • All
United States, 7 minutes ago
France, 26 minutes ago
Singapore, 31 minutes ago
Macao, 47 minutes ago
Singapore, 58 minutes ago
Traffic: 815 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6