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regression
•
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0
votes
10
replies
2.4k
views
assignChromosomeRegion in 2.6.0 ChIPpeakAnno
Microarray
Annotation
GO
Network
Regression
Survival
Infrastructure
Escherichia coli
ROC
11.1 years ago
Julie Zhu
★ 4.3k
11
votes
3
replies
1.7k
views
Fit a multinomial to RNA-seq count data
voom
limma
glm
multinomial
regression
updated 7.8 years ago by
Robert Castelo
★ 3.3k • written 7.8 years ago by
rubi
▴ 110
0
votes
7
replies
1.4k
views
M vs A plot
Microarray
Normalization
Regression
Cancer
marray
Microarray
Normalization
Regression
updated 20.2 years ago by
Naomi Altman
★ 6.0k • written 20.2 years ago by
Richard Friedman
★ 2.0k
0
votes
7
replies
1.7k
views
affy code archeology: expresso behavior for liwong/invariantset
Regression
gcrma
Regression
gcrma
updated 11.2 years ago by
James W. MacDonald
65k • written 11.3 years ago by
Guest User
★ 13k
2
votes
5
replies
15k
views
Limma design and contrast matrix question.
Microarray
Regression
limma
Microarray
Regression
limma
updated 10.3 years ago by
James W. MacDonald
65k • written 10.3 years ago by
Matthew Thornton
▴ 350
1
vote
3
replies
2.1k
views
limma report logFC confidence interval?
Regression
limma
Regression
limma
updated 2.9 years ago by
Gordon Smyth
50k • written 13.2 years ago by
Segal, Corrinne
▴ 40
0
votes
2
replies
1.0k
views
Drosophila GeneChip analysis
Regression
Regression
updated 20.0 years ago by
Arne.Muller@aventis.com
▴ 620 • written 20.0 years ago by
Paul Mack
▴ 30
0
votes
5
replies
1.2k
views
IRanges causes bug in complete.cases
Regression
IRanges
Regression
IRanges
updated 14.4 years ago by
Michael Lawrence
★ 11k • written 14.4 years ago by
Kasper Daniel Hansen
★ 6.5k
0
votes
5
replies
1.3k
views
limma question: direct two-color design & modeling individual subject effects
SystemsBiology
Regression
probe
limma
SystemsBiology
Regression
probe
limma
updated 17.0 years ago by
Paul Shannon
★ 1.1k • written 17.0 years ago by
Gordon Smyth
50k
0
votes
2
replies
3.5k
views
multtest and Cox regression
Regression
multtest
Regression
multtest
updated 19.0 years ago by
Benjamin Haibe-Kains
▴ 10 • written 19.0 years ago by
Benjamin Haibe-Kains
▴ 140
0
votes
5
replies
3.0k
views
Finding genes with significant linear regression or trend
Microarray
Regression
Cancer
limma
DOSE
Microarray
Regression
Cancer
limma
DOSE
updated 15.9 years ago by
Ana Conesa
▴ 340 • written 15.9 years ago by
Daniel Brewer
★ 1.9k
0
votes
4
replies
2.1k
views
How to create nested data frames
Regression
Regression
16.5 years ago
Ana Conesa
▴ 130
2
votes
23
replies
3.5k
views
Coping with a label/class imbalance in DESeq2
deseq2
rnaseq
r
regression
updated 7.6 years ago by
Michael Love
41k • written 7.6 years ago by
bkellman
• 0
0
votes
3
replies
1.4k
views
GCRMA: feature request
GO
Regression
probe
gcrma
frma
GO
Regression
probe
gcrma
frma
updated 13.3 years ago by
Björn Usadel
▴ 250 • written 13.3 years ago by
Guido Hooiveld
★ 3.9k
1
vote
2
replies
3.4k
views
Kernel Ridge Regression in R for Drug-Target Interaction
regression
kernel
ridge
r
updated 7.6 years ago by
Guido Kraemer
• 0 • written 8.0 years ago by
ረ
• 0
0
votes
2
replies
215
views
WGCNA: analysis of complex trait associations with regressions
Regression
WGCNA
29 days ago • updated 24 days ago
w.cookson
• 0
0
votes
1
reply
1.5k
views
Choosing the kernel for SVM (regression) using rminer package
Regression
Regression
updated 10.1 years ago by
Steve Lianoglou
★ 13k • written 10.1 years ago by
Guest User
★ 13k
0
votes
1
reply
1.1k
views
question about limma fit differences?
Regression
limma
Regression
limma
updated 20.2 years ago by
Gordon Smyth
50k • written 20.2 years ago by
Simon Melov
▴ 20
0
votes
2
replies
2.0k
views
UCSC data anomaly in 50638 transcript(s): the cds cumulative length is
Genetics
GO
Regression
Cancer
TranscriptDb
Genetics
GO
Regression
Cancer
TranscriptDb
updated 9.9 years ago by
Tarca, Adi
▴ 570 • written 9.9 years ago by
Hervé Pagès
16k
0
votes
4
replies
2.5k
views
DESeq2 high fold change values for comparison of samples with zero counts
Regression
DESeq
DESeq2
Regression
DESeq
DESeq2
updated 10.2 years ago by
Michael Love
41k • written 10.2 years ago by
Noa Henig
▴ 60
0
votes
1
reply
1.3k
views
Bioconductor 2.1 is released
SNP
Microarray
SAGE
Annotation
Bayesian
Regression
GUI
CGH
hgu95av2
graph
Rgraphviz
SNP
16.6 years ago
Hervé Pagès
16k
0
votes
1
reply
1.5k
views
Support vector regression
Classification
Regression
Classification
Regression
updated 10.1 years ago by
Steve Lianoglou
★ 13k • written 10.1 years ago by
Guest User
★ 13k
0
votes
1
reply
995
views
GWASTools: quasi-/perfect linear separation
Regression
updated 9.6 years ago by
Stephanie M. Gogarten
▴ 870 • written 9.6 years ago by
Guest User
★ 13k
0
votes
1
reply
1.6k
views
[MEDIPS] mergeFrames: `Error in rbind(output, cbind(chromosomes[i], new_start, new_stop)) `
Coverage
Regression
edgeR
MEDIPS
Coverage
Regression
edgeR
MEDIPS
updated 10.3 years ago by
Matthias Lienhard
▴ 240 • written 10.3 years ago by
Pierre Lindenbaum
▴ 10
0
votes
1
reply
703
views
mean versus linear model?
Regression
limma
Regression
limma
updated 20.3 years ago by
Naomi Altman
★ 6.0k • written 20.3 years ago by
Simon Melov
▴ 340
0
votes
3
replies
8.9k
views
ggplot2 error
Regression
Regression
10.2 years ago
Alyaa Mahmoud
▴ 440
0
votes
2
replies
4.2k
views
edgeR choose the best model of GLM
Regression
edgeR
Regression
edgeR
updated 11.2 years ago by
Gordon Smyth
50k • written 11.2 years ago by
Eszter Ari
▴ 40
0
votes
1
reply
2.1k
views
Dose-Response: Regressiion and ANOVA
Regression
DOSE
Regression
DOSE
updated 19.3 years ago by
Liaw, Andy
▴ 360 • written 19.3 years ago by
Arne.Muller@aventis.com
▴ 620
0
votes
3
replies
1.2k
views
edgeR and tagwise dispersion: overcorrection for multiple tests?
SAGE
Regression
edgeR
BRAIN
SAGE
Regression
edgeR
BRAIN
updated 11.8 years ago by
Martin Morgan
25k • written 11.8 years ago by
Gordon Smyth
50k
0
votes
3
replies
3.6k
views
lower.limits and upper.limits in glmnet
Regression
Regression
updated 10.5 years ago by
Yue Li
▴ 60 • written 10.5 years ago by
Yue Li
▴ 370
8
votes
3
replies
6.9k
views
Removing batch effects with sva and combat using the sva package
Regression
limma
sva
Regression
limma
sva
updated 12.4 years ago by
Andrew Teschendorff
▴ 60 • written 12.4 years ago by
Jeff Leek
▴ 650
0
votes
1
reply
1.8k
views
maSigPro and "subscript out of bounds"
Normalization
Regression
maSigPro
Normalization
Regression
maSigPro
updated 12.9 years ago by
Andrea Grilli
▴ 240 • written 12.9 years ago by
Valerie Obenchain
★ 6.8k
1
vote
1
reply
7.1k
views
[LIMMA]lmFit with continuous predictor
Regression
limma
Regression
limma
updated 11.8 years ago by
Belinda Phipson
▴ 130 • written 11.8 years ago by
yao chen
▴ 210
2
votes
2
replies
2.2k
views
[limma] [Rfit] [samr] Gene expression distribution using lmFit and eBayes
Microarray
Regression
Microarray
Regression
updated 10.4 years ago by
Gordon Smyth
50k • written 10.4 years ago by
Jérôme Lane
▴ 30
0
votes
1
reply
1.6k
views
paired microarray samples
Regression
limma
beadarray
Regression
limma
beadarray
updated 14.5 years ago by
Naomi Altman
★ 6.0k • written 14.5 years ago by
Chris Fjell
▴ 60
0
votes
1
reply
984
views
predict an ordinal response variable from high-throughput gene expression data
Microarray
Regression
Microarray
Regression
updated 14.5 years ago by
John Stevens
▴ 30 • written 14.5 years ago by
shirley zhang
★ 1.0k
0
votes
2
replies
900
views
Filter before? Filter after? With maanova
Regression
probe
maanova
Regression
probe
maanova
updated 14.8 years ago by
rgentleman
★ 5.5k • written 14.8 years ago by
Loren Engrav
★ 1.0k
0
votes
1
reply
1.1k
views
Huber et al: Variance stabilization ...
Microarray
Regression
Microarray
Regression
updated 21.2 years ago by
Wolfgang Huber
★ 13k • written 21.2 years ago by
"Hüsing, Johannes"
▴ 60
0
votes
7
replies
1.3k
views
IRanges: interaction with model fitting
Regression
IRanges
Regression
IRanges
updated 13.7 years ago by
Martin Morgan
25k • written 13.7 years ago by
Kasper Daniel Hansen
★ 6.5k
0
votes
2
replies
1.9k
views
how to create an affybatch
Normalization
Regression
hgu133a
probe
Normalization
Regression
hgu133a
probe
14.8 years ago
Venkat Sundar
▴ 30
0
votes
2
replies
815
views
Newbe question
Regression
Regression
12.8 years ago
SimonNoël
▴ 450
0
votes
6
replies
1.4k
views
SNPcounts error in SNPlocs.Hsapiens.dbSNP.20110815_0.99.3 (i.e., my attempt to update SNPlocs to dbSNP build 134)
Regression
SNPlocs
Biostrings
Regression
SNPlocs
Biostrings
updated 12.6 years ago by
Vincent J. Carey, Jr.
6.7k • written 12.6 years ago by
Tim Triche
★ 4.2k
0
votes
2
replies
890
views
missing values in limma/contrasts.fit
Microarray
Regression
probe
limma
Microarray
Regression
probe
limma
updated 14.4 years ago by
Albyn Jones
▴ 70 • written 14.4 years ago by
Gordon Smyth
50k
0
votes
1
reply
995
views
[R] lowess regression
Regression
Regression
updated 11.6 years ago by
S Ellison
▴ 10 • written 11.6 years ago by
Bogdan
▴ 670
0
votes
2
replies
1.1k
views
Maanova & createdata
Regression
maanova
Regression
maanova
updated 15.5 years ago by
Marcelo Laia
▴ 450 • written 15.5 years ago by
Loren Engrav
★ 1.0k
0
votes
1
reply
966
views
batch effects and VSN
Normalization
Regression
vsn
limma
oligo
Normalization
Regression
vsn
limma
oligo
updated 16.6 years ago by
Wolfgang Huber
★ 13k • written 16.6 years ago by
Hans-Ulrich Klein
▴ 330
0
votes
1
reply
2.3k
views
forward conditional Cox and logistic regression
Genetics
Regression
Survival
Genetics
Regression
Survival
updated 15.4 years ago by
Laurent Gautier
★ 2.3k • written 15.4 years ago by
Katleen De Preter
▴ 130
0
votes
1
reply
733
views
Binary regression trees
Regression
Regression
updated 19.0 years ago by
Arne.Muller@sanofi-aventis.com
▴ 210 • written 19.0 years ago by
Boris Umylny
▴ 10
0
votes
2
replies
1.8k
views
[MEDIPS] Error in 1:max_signal_index : argument of length 0 - what does mean?
Preprocessing
Regression
MEDIPS
Preprocessing
Regression
MEDIPS
updated 10.3 years ago by
Lukas Chavez
▴ 570 • written 10.3 years ago by
김종환
▴ 20
0
votes
2
replies
941
views
Does old workspace work?
Regression
probe
gcrma
PROcess
maanova
Regression
probe
gcrma
PROcess
maanova
updated 15.5 years ago by
Kasper Daniel Hansen
★ 6.5k • written 15.5 years ago by
Loren Engrav
★ 1.0k
50 results • Page
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Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Votes
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
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