Showing : regression • reset
0
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2
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215
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WGCNA: analysis of complex trait associations with regressions
Regression WGCNA
29 days ago • updated 24 days ago w.cookson • 0
5
votes
25
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829
views
limma models out of memory issue on Slurm HPC
Regression limma STATISITICS HPC
updated 22 days ago by 50k • written 4 weeks ago by ▴ 10
0
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0
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219
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multipollutant models
statistics Regression r limma
4 months ago Jitendra ▴ 10
2
votes
4
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1.2k
views
Overfitting in limma
limma Regression overfitting
updated 23 months ago by 50k • written 24 months ago by ▴ 30
1
vote
1
reply
804
views
limma: pvalues for coefficients topTable
TimeSeriesExperiment Regression top limma
updated 2.7 years ago by 65k • written 2.7 years ago by • 0
4
votes
3
replies
991
views
Diffbind for regressing multiple confounding variables (blocking factors)
diffbind block regression deseq2 chipseq
updated 3.5 years ago by ★ 5.2k • written 4.5 years ago by ▴ 10
0
votes
1
reply
562
views
Which Package Should I Use to Predict Model Output Using RNA Seq Data?
regression
updated 3.8 years ago by 50k • written 3.8 years ago by • 0
7
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4
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4.2k
views
Limma when to use zero intercept
limma regression differential expression linear model
updated 4.2 years ago by 50k • written 4.2 years ago by • 0
1
vote
2
replies
782
views
EdgeR -- differentially expressed genes across a continuous variable
edger continuous regression
updated 5.2 years ago by 65k • written 5.2 years ago by • 0
6
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7
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2.1k
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Multi-level experiment with limma
limma design and contrast matrix differential gene expression regression
updated 6.8 years ago by ★ 28k • written 6.8 years ago by • 0
3
votes
3
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1.2k
views
Limma - Two-color group differences *and* correlation with individual differences.
limma regression
updated 7.2 years ago by 50k • written 7.2 years ago by ▴ 30
1
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2
replies
3.4k
views
Kernel Ridge Regression in R for Drug-Target Interaction
regression kernel ridge r
updated 7.6 years ago by • 0 • written 8.0 years ago by • 0
2
votes
23
replies
3.5k
views
Coping with a label/class imbalance in DESeq2
deseq2 rnaseq r regression
updated 7.6 years ago by 41k • written 7.6 years ago by • 0
11
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3
replies
1.7k
views
Fit a multinomial to RNA-seq count data
voom limma glm multinomial regression
updated 7.8 years ago by ★ 3.3k • written 7.8 years ago by ▴ 110
1
vote
5
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1.8k
views
deseq2 normalized data
regression deseq2 counts
updated 8.6 years ago by 41k • written 8.6 years ago by • 0
0
votes
1
reply
996
views
GWASTools: quasi-/perfect linear separation
Regression
updated 9.6 years ago by ▴ 870 • written 9.6 years ago by ★ 13k
0
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2
replies
2.0k
views
UCSC data anomaly in 50638 transcript(s): the cds cumulative length is
Genetics GO Regression Cancer TranscriptDb Genetics GO Regression Cancer TranscriptDb
updated 9.9 years ago by ▴ 570 • written 9.9 years ago by 16k
0
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1
reply
1.5k
views
Choosing the kernel for SVM (regression) using rminer package
Regression Regression
updated 10.1 years ago by ★ 13k • written 10.1 years ago by ★ 13k
0
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1
reply
1.5k
views
Support vector regression
Classification Regression Classification Regression
updated 10.1 years ago by ★ 13k • written 10.1 years ago by ★ 13k
0
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0
replies
1.5k
views
Data Analysis for Genomics, free HarvardX course, starts April 7
Regression Regression
10.1 years ago Michael Love 41k
0
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4
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2.5k
views
DESeq2 high fold change values for comparison of samples with zero counts
Regression DESeq DESeq2 Regression DESeq DESeq2
updated 10.2 years ago by 41k • written 10.2 years ago by ▴ 60
0
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3
replies
8.9k
views
ggplot2 error
Regression Regression
10.2 years ago Alyaa Mahmoud ▴ 440
2
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5
replies
15k
views
Limma design and contrast matrix question.
Microarray Regression limma Microarray Regression limma
updated 10.3 years ago by 65k • written 10.3 years ago by ▴ 350
0
votes
1
reply
1.6k
views
[MEDIPS] mergeFrames: `Error in rbind(output, cbind(chromosomes[i], new_start, new_stop)) `
Coverage Regression edgeR MEDIPS Coverage Regression edgeR MEDIPS
updated 10.3 years ago by ▴ 240 • written 10.3 years ago by ▴ 10
0
votes
2
replies
1.8k
views
[MEDIPS] Error in 1:max_signal_index : argument of length 0 - what does mean?
Preprocessing Regression MEDIPS Preprocessing Regression MEDIPS
updated 10.3 years ago by ▴ 570 • written 10.3 years ago by ▴ 20
0
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0
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1.7k
views
EdgeR Design matrix not of full rank. The following coefficients not estimable errorR
Regression edgeR Regression edgeR
10.3 years ago Gordon Smyth 50k
0
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0
replies
972
views
EdgeR Design matrix not of full rank. The following coefficients not estimable errorR
Regression edgeR Regression edgeR
10.4 years ago Eugene Bolotin ▴ 20
0
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1
reply
1.6k
views
[R] freetype 2.5.2, problem with the survival package, build R 2.15.x with gcc 4.8.x
Regression Survival snpStats Regression Survival snpStats
10.4 years ago David Winsemius ▴ 40
0
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0
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3.5k
views
Inquiries about fitType on DESeq2
Regression DESeq2 Regression DESeq2
10.4 years ago Michael Love 41k
2
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2
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2.3k
views
[limma] [Rfit] [samr] Gene expression distribution using lmFit and eBayes
Microarray Regression Microarray Regression
updated 10.4 years ago by 50k • written 10.4 years ago by ▴ 30
0
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3
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3.6k
views
lower.limits and upper.limits in glmnet
Regression Regression
updated 10.5 years ago by ▴ 60 • written 10.5 years ago by ▴ 370
0
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0
replies
1.4k
views
CfP: CAMDA 2013 - 12th International Conference on Critical Assessment of Massive Data Analysis
Genetics Classification Regression Genetics Classification Regression
11.0 years ago CAMDA 2013 ▴ 30
0
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0
replies
1.1k
views
CAMDA 2013 Challenge: Big Data in Life Sciences
Sequencing Microarray Genetics Classification Clustering Regression Sequencing Microarray
11.1 years ago CAMDA 2013 ▴ 30
0
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10
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2.4k
views
assignChromosomeRegion in 2.6.0 ChIPpeakAnno
Microarray Annotation GO Network Regression Survival Infrastructure Escherichia coli ROC
11.1 years ago Julie Zhu ★ 4.3k
0
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2
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4.2k
views
edgeR choose the best model of GLM
Regression edgeR Regression edgeR
updated 11.2 years ago by 50k • written 11.2 years ago by ▴ 40
0
votes
7
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1.7k
views
affy code archeology: expresso behavior for liwong/invariantset
Regression gcrma Regression gcrma
updated 11.2 years ago by 65k • written 11.3 years ago by ★ 13k
0
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1
reply
997
views
[R] lowess regression
Regression Regression
updated 11.6 years ago by ▴ 10 • written 11.6 years ago by ▴ 670
0
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0
replies
1.0k
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lowess regression
Regression Regression
11.6 years ago Bogdan ▴ 670
1
vote
1
reply
7.1k
views
[LIMMA]lmFit with continuous predictor
Regression limma Regression limma
updated 11.8 years ago by ▴ 130 • written 11.8 years ago by ▴ 210
0
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3
replies
1.2k
views
edgeR and tagwise dispersion: overcorrection for multiple tests?
SAGE Regression edgeR BRAIN SAGE Regression edgeR BRAIN
updated 11.8 years ago by 25k • written 11.8 years ago by 50k
0
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0
replies
1.2k
views
edgeR and tagwise dispersion: overcorrection for multiple tests?
SAGE Regression edgeR BRAIN SAGE Regression edgeR BRAIN
11.8 years ago alessandro.guffanti@genomnia.com ▴ 330
0
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0
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1.1k
views
about edgeR
Regression Regression
11.8 years ago wang peter ★ 2.0k
0
votes
0
replies
1.5k
views
design and contrast matrix for limma time series without replicates
Microarray GO Regression limma Microarray GO Regression limma
11.9 years ago Chunxuan Shao ▴ 30
0
votes
0
replies
832
views
Outcome~predictor model evaluation, repeated measurements
Regression Regression
12.0 years ago rad mac ▴ 10
0
votes
0
replies
1.7k
views
edgeR-DeSeq - inconsistency between Variance and Coefficient of Variation
Regression edgeR DESeq Regression edgeR DESeq
12.1 years ago Gordon Smyth 50k
8
votes
3
replies
6.9k
views
Removing batch effects with sva and combat using the sva package
Regression limma sva Regression limma sva
updated 12.4 years ago by ▴ 60 • written 12.4 years ago by ▴ 650
0
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0
replies
1.2k
views
Use of glm for multivariate logistic regression of microarray data
Microarray Regression Microarray Regression
12.5 years ago Ruppert Valentino ▴ 270
0
votes
0
replies
753
views
Binomial regression of HTqPCR data
Regression HTqPCR Regression HTqPCR
12.5 years ago Christopher Howerton ▴ 40
0
votes
0
replies
898
views
Regression analysis using expression microarray to determine phenotypic correlation
Microarray Regression Microarray Regression
12.5 years ago Ruppert Valentino ▴ 270
0
votes
6
replies
1.4k
views
SNPcounts error in SNPlocs.Hsapiens.dbSNP.20110815_0.99.3 (i.e., my attempt to update SNPlocs to dbSNP build 134)
Regression SNPlocs Biostrings Regression SNPlocs Biostrings
updated 12.6 years ago by 6.7k • written 12.6 years ago by ★ 4.2k
50 results • Page 1 of 1
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 30
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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