Bioconductor Rmarkdown

Showing : rmarkdown • reset

votes

replies

2.3k

views

rmarkdown suppressWarning warning

updated 20 months ago by Mike Smith ★ 6.5k • written 2.8 years ago by Wolfgang Huber ★ 13k

vote

1.3k

views

ReportingTools RNA-Seq RMarkdown

updated 4.1 years ago by James W. MacDonald 67k • written 4.1 years ago by anthony.nash ▴ 20

votes

replies

720

views

BiocWorkflowTools rmarkdown

4.4 years ago helucro ▴ 70

vote

replies

1.6k

views

BrowseSeqs DECIPHER notebook rmarkdown

updated 5.1 years ago by Erik Wright ▴ 150 • written 5.1 years ago by lauren.fitch • 0

vote

1.3k

views

rmarkdown knitr

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by Keith Hughitt ▴ 180

votes

replies

3.9k

views

package development bioconductor rstudio rmarkdown vignettes

6.9 years ago clarisbaby • 0

votes

replies

3.3k

views

BiocStyle vignettes rmarkdown latex News

7.2 years ago • updated 7.1 years ago Andrzej Oleś ▴ 750

votes

3.4k

views

biocstyle Rmarkdown Tutorial

7.2 years ago Wolfgang Huber ★ 13k

votes

replies

1.9k

views

BiocWorkflowTools rmarkdown

updated 7.3 years ago by Andrzej Oleś ▴ 750 • written 7.3 years ago by Leonardo Collado Torres ★ 1.1k

votes

replies

16k

views

rmarkdown rstudio knitr

8.0 years ago Jon Bråte ▴ 250

votes

replies

3.6k

views

rmarkdown package updates

updated 8.1 years ago by James W. MacDonald 67k • written 8.1 years ago by tarek.mohamed ▴ 10

11 results • Page 1 of 1

Recent ...

Replies

Comment: How to conduct maSigPro analysis with only one condition? by James W. MacDonald 67k

Technically it's fitting an analysis of deviance (ANODEV) test, but the principle is the same - deviance, like the likelihood, measures goo…

Comment: How to conduct maSigPro analysis with only one condition? by James W. MacDonald 67k

Yeah, it's fine. What `maSigPro` does in this case is to reformulate the data. Your design has columns that are not useful, and `maSigPro` …

Answer: Unable to install any Bioconductor package with new R 4.4.1 - path nor writable by James W. MacDonald 67k

You have installed the packages you wanted: ``` package BiocVersion successfully unpacked and MD5 sums checked package LEA success…

Comment: QSEA- Extraction of Normalized methylation across the samples by celiaruby127 • 0

If you need specific counts for defined regions or windows, you may want to explore other functions or slots within the QSEA object that co…

Comment: How to conduct maSigPro analysis with only one condition? by Jay • 0

Yes, you are right! Great thanks! BTW, according to your working experience on maSigPro, do you think it is suitable for differential analy…

Votes

Answer: How to conduct maSigPro analysis with only one condition?

Answer: Removing Effect of Covariate in Only a Subset of Samples in a Model Containing A

Answer: Importing data into the DESeq2 pipeline using tximport

Comment: dmpFinder for other objects

Awards • All

Scholar to James W. MacDonald 67k