Bioconductor Rmarkdown

Showing : rmarkdown • reset

votes

replies

2.3k

views

rmarkdown suppressWarning warning

updated 20 months ago by Mike Smith ★ 6.5k • written 2.9 years ago by Wolfgang Huber ★ 13k

votes

replies

3.3k

views

BiocStyle vignettes rmarkdown latex News

7.2 years ago Andrzej Oleś ▴ 750

votes

replies

16k

views

rmarkdown rstudio knitr

8.0 years ago Jon Bråte ▴ 250

votes

replies

3.9k

views

package development bioconductor rstudio rmarkdown vignettes

6.9 years ago clarisbaby • 0

votes

replies

1.9k

views

BiocWorkflowTools rmarkdown

updated 7.3 years ago by Andrzej Oleś ▴ 750 • written 7.3 years ago by Leonardo Collado Torres ★ 1.1k

votes

replies

3.6k

views

rmarkdown package updates

updated 8.1 years ago by James W. MacDonald 67k • written 8.1 years ago by tarek.mohamed ▴ 10

vote

replies

1.6k

views

BrowseSeqs DECIPHER notebook rmarkdown

updated 5.1 years ago by Erik Wright ▴ 150 • written 5.1 years ago by lauren.fitch • 0

votes

3.4k

views

biocstyle Rmarkdown Tutorial

7.2 years ago Wolfgang Huber ★ 13k

vote

1.3k

views

ReportingTools RNA-Seq RMarkdown

updated 4.1 years ago by James W. MacDonald 67k • written 4.1 years ago by anthony.nash ▴ 20

vote

1.3k

views

rmarkdown knitr

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by Keith Hughitt ▴ 180

votes

replies

721

views

BiocWorkflowTools rmarkdown

4.4 years ago helucro ▴ 70

11 results • Page 1 of 1

Recent ...

Replies

Answer: How to subset voomLmFit (MArrayLM) object? by Gordon Smyth 51k

Yes, the current behaviour is absolutely intentional. It doesn't seem to me to be meaningful or useful to try to subset the EList object au…

Answer: Need help interpreting heatmaps from limma by James W. MacDonald 67k

Heatmaps don't do any comparisons. They just plot the underlying data in a matrix and color the blocks based (in your case) on the by-gene …

Comment: Are transformed values from rlog /vst log2 normalized counts? by Eva ▴ 10

I understood exactly what you said, but I got confused with the documentation and the info that gives about rlog because it seems to be tha…

Answer: featureCounts fails to load annotation file by James W. MacDonald 67k

I imagine Wei Shi will be along later with actual help, but for now do note that you can use an SAF file instead of a GTF. It's easy enough…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 67k

That error indicates that you have a file called NCBI.sqlite in your working directory that is missing some tables. You should delete that …

Votes

A: eBayes warning: zero sample variances

Answer: Are transformed values from rlog /vst log2 normalized counts?

Comment: Are transformed values from rlog /vst log2 normalized counts?

Awards • All

Scholar to James W. MacDonald 67k