Bioconductor Rna seq

Showing : rna seq • reset

votes

replies

2.6k

views

deseq2 mahattan plot RNA Seq

updated 3.6 years ago by bernatgel ▴ 150 • written 4.5 years ago by adeler001 • 0

votes

replies

3.2k

views

batch effect limma rna seq DE

updated 4.0 years ago by Steve Lianoglou ★ 13k • written 4.0 years ago by svlachavas ▴ 830

votes

replies

650

views

RNA seq cpm

updated 4.1 years ago by Kevin Blighe ★ 3.9k • written 4.1 years ago by isabel.pieterse • 0

votes

replies

888

views

sgseq alternative splicing rna seq

updated 4.4 years ago by Leonard Goldstein ▴ 200 • written 4.4 years ago by 116100016 • 0

vote

replies

896

views

edger RNA Seq

updated 4.4 years ago by James W. MacDonald 65k • written 4.4 years ago by abf ▴ 30

votes

replies

497

views

rna seq

4.5 years ago adeler001 • 0

votes

replies

781

views

rna seq SGSeq Alternative splicing

updated 4.6 years ago by Leonard Goldstein ▴ 200 • written 4.6 years ago by 116100016 • 0

votes

551

views

deseq2 likelihood ratio rna seq wald test

updated 4.6 years ago by Michael Love 41k • written 4.6 years ago by adeler001 • 0

votes

replies

947

views

volcano plot rna seq

updated 4.7 years ago by Michael Love 41k • written 4.7 years ago by adeler001 • 0

vote

replies

1.3k

views

limma voom RNA Seq Time-course experiments

updated 4.9 years ago by Aaron Lun ★ 28k • written 4.9 years ago by mahes.muniandy • 0

votes

replies

967

views

RNA seq wgcna

updated 4.9 years ago by Peter Langfelder ★ 3.0k • written 4.9 years ago by agustin.gonvi ▴ 20

vote

replies

1.9k

views

rna seq trimmomatic trimming adapter trimming paired analysis

5.0 years ago Mozart ▴ 30

votes

replies

1.6k

views

heatmap.2 hierarchical clustering microarray RNA seq DEG

6.2 years ago lawarde.ankita1 ▴ 30

13 results • Page 1 of 1

Recent ...

Replies

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …

Comment: Help with running egsea() by James W. MacDonald 65k

Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…

Comment: Help with running egsea() by Chris • 0

Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…

Comment: Help with running egsea() by James W. MacDonald 65k

I don't understand the last question, but do look at the msigdb.gsets argument to `buildIdx` in the help page for that function.

Votes

Comment: Help with running egsea()

Answer: Trim/Filter out-of-bounds GRanges

Comment: Help with running egsea()

Answer: How to save the DEXSeq results

Awards • All

Scholar to Michael Love 41k

Popular Question to Malcolm Cook ★ 1.6k

Teacher to Gordon Smyth 50k