Biostar Rna seq

Showing : rna seq • reset

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1.6k

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deseq2 mahattan plot RNA Seq

updated 2.3 years ago by bernatgel ▴ 150 • written 3.3 years ago by adeler001 • 0

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1.8k

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batch effect limma rna seq DE

updated 2.8 years ago by Steve Lianoglou 13k • written 2.8 years ago by svlachavas ▴ 800

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373

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RNA seq cpm

updated 2.8 years ago by Kevin Blighe 3.7k • written 2.8 years ago by isabel.pieterse • 0

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471

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sgseq alternative splicing rna seq

updated 3.2 years ago by Leonard Goldstein ▴ 150 • written 3.2 years ago by 116100016 • 0

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447

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edger RNA Seq

updated 3.2 years ago by James W. MacDonald 62k • written 3.2 years ago by abf ▴ 30

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279

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rna seq

3.2 years ago adeler001 • 0

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430

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rna seq SGSeq Alternative splicing

updated 3.3 years ago by Leonard Goldstein ▴ 150 • written 3.3 years ago by 116100016 • 0

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328

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deseq2 likelihood ratio rna seq wald test

updated 3.4 years ago by Michael Love 39k • written 3.4 years ago by adeler001 • 0

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574

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volcano plot rna seq

updated 3.5 years ago by Michael Love 39k • written 3.5 years ago by adeler001 • 0

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722

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limma voom RNA Seq Time-course experiments

updated 3.6 years ago by Aaron Lun ★ 28k • written 3.6 years ago by mahes.muniandy • 0

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575

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RNA seq wgcna

updated 3.7 years ago by Peter Langfelder ★ 2.7k • written 3.7 years ago by agustin.gonvi ▴ 10

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1.3k

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rna seq trimmomatic trimming adapter trimming paired analysis

3.8 years ago Mozart ▴ 20

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1.2k

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heatmap.2 hierarchical clustering microarray RNA seq DEG

5.0 years ago lawarde.ankita1 ▴ 20

13 results • Page 1 of 1

Recent ...

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Comment: Which input file is used for DGEList in EgdeR? by mohammedtoufiq91 ▴ 10

Thank you @gordonsmyth My collaborator asked me to test this pipeline with `egdeR` package. We are interested at gene level analysis only…

Answer: Why in Bioconductor community people rarely upvote questions? by Gordon Smyth 47k

I think it is a good idea to start a discussion with correct information. Looking back through Bioconductor Support records, it is not at a…

Comment: How to identify top most variable genes from log2 normalized data? by Gordon Smyth 47k

Your code doesn't look right to me. I think you're using order() where sort() would be more appropriate. To order your cpm matrix by row v…

Comment: How to load fasta file with openPrimeR? by Santiago Edilberto • 0

> library(openPrimeR) There are missing/non-functioning external tools. To use the full potential of openPrimeR, please mak…

Answer: Which input file is used for DGEList in EgdeR? by Gordon Smyth 47k

I use and recommend featureCounts. Despite all that has been written on this topic, I still think that direct gene counting is faster and m…

Votes

Answer: Which input file is used for DGEList in EgdeR?

Answer: Identifying DEGs using lfcshrink()

Answer: Is this DESeq2 interactions design correct?

Comment: STRINGdb string_db$map error

Comment: How to normalize long-read RNA-seq data for comparison with short-reads

Awards • All

Scholar to James W. MacDonald 62k

Teacher to Michael Love 39k