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sofie.haglund
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Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★
2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Comment: Errors in chromosome annotation-biomaRt
by
blackwidowzzz
•
0
I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …
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James W. MacDonald
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If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
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James W. MacDonald
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Please don't add to posts from two years ago. Instead make a new post.
Also, please read the help page for `readidat`. The only reason to …
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James W. MacDonald
66k
In that case, probably easiest to subset to the groups being compared.
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