Showing : rnaseqrdata • reset
4
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4
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1.1k
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DEseq2: working with unbalanced number of sample in tumor study?
Deseq2 RNASeqRData unbalancedsamplesize
updated 23 months ago by 41k • written 3.2 years ago by • 0
2
votes
2
replies
2.7k
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How to download KEGG pathways for list of enriched genes
RNASeqRData GO
3.2 years ago Wuschel ▴ 10
1
vote
5
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2.1k
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How can I use bioconductor and Deseq2 in linux ubuntu 18
RiboProfiling DESeq2 Bioconductor RNASeqRData
updated 18 months ago by ★ 3.9k • written 3.3 years ago by • 0
1
vote
3
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675
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What should I do with RNA-Seq data to get a gene that work?
find RNASeqRData
updated 18 months ago by ★ 4.1k • written 18 months ago by • 0
1
vote
4
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1.4k
views
merge TPM values for same geneID
RNASeqRData TPM
updated 19 months ago by ★ 4.1k • written 19 months ago by ▴ 10
1
vote
4
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812
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RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA gene RNASeqRData edgeR geneontology
18 months ago faiza • 0
1
vote
1
reply
788
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edgeR for SDE analysis
RNASeqRData edgeR RNASeqR RNASeqData
updated 2.2 years ago by 50k • written 2.2 years ago by • 0
1
vote
2
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884
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Is 100K genes too many to run ComBat_seq on?
RNASeqRData combat_Seq BatchEffect
2.6 years ago • updated 2.3 years ago zeegzaag • 0
0
votes
0
replies
737
views
display .CT files in a BioC package
RNAinteract rnaseqGene RNASeqRData rnaseqcomp
3.2 years ago Bogdan ▴ 670
0
votes
1
reply
866
views
Limma Voom Design and Contrast Matrix- Can my parameter also be a factor?
RNASeqRData limma RNASeq RNASeqR
updated 3.1 years ago by 50k • written 3.1 years ago by • 0
0
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17
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3.2k
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results(dds) error: couldn't find results. you should first run DESeq()
RNASeqRData
updated 2.2 years ago by 41k • written 2.2 years ago by • 0
0
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0
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471
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how to create PHENO_DATA
RNASeq RNASeqData RNASeqRData
20 months ago marymshahi2021 • 0
0
votes
1
reply
600
views
DeSeq2 timecourse analysis
RNAseqRData DeSeq2
updated 2.1 years ago by 41k • written 2.1 years ago by • 0
13 results • Page 1 of 1
Recent ...
Replies
Comment: Couldn't connect to server while using "pathways" by Michael Love 41k
You've put the tag "DESeq2" which results in an email to the maintainer, me, that I should respond to a post on the support site. Can you …
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Vincent J. Carey, Jr. 6.7k
btw that was run on M1 mac
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Vincent J. Carey, Jr. 6.7k
the test is not portable > aa <- aa_mutmat(acc = "MIYS930101", aaindex = "aaindex2") > str(aa) num [1:20, 1:20] 0.34 -0.0…
Comment: Method to find pathways different between 2 groups by Chris • 0
Sorry for not clear. I just try to find papers use this method for learning purpose. Which gives more context and detail examples, so I may…
Comment: Improving the design matrices vignette in RNAseq123 by Lluís Revilla Sancho ▴ 730
Cool. Thanks for looking into it.
Votes
Answer: Method to find pathways different between 2 groups
Comment: Trying to use enrichGO
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
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