Showing : ruvnormalize • reset
2
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Decide normalisation method in RUVseq for RNAseq data
edger ruvseq rnaseq normalization ruvnormalize
updated 6.9 years ago by ▴ 950 • written 6.9 years ago by • 0
2
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1.2k
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naiveRandRUV Error When k is 1
RUVNormalize Subsetting
updated 8.8 years ago by ▴ 10 • written 8.9 years ago by ★ 1.5k
2
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9
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2.5k
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Zero inflation in RUV normalization and DE for single cell data
ruv ruvseq ruvnormalize single-cell zero-inflated
updated 6.7 years ago by ▴ 950 • written 6.7 years ago by ▴ 80
2
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6
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1.5k
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effect of polyploidy level on RUVs normalisation
normalization ruvseq ruvnormalize ruvs eda
8.0 years ago thomas.wolfe • 0
2
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1
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1.5k
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RUVSeq empirical negative controls? how many to take to find the span set
ruvseq RUV ruvnormalize ruvg
7.8 years ago anthonycolombo60 • 0
1
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3
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2.3k
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Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV ruvseq ruvr ruvnormalize single cell
6.8 years ago Nik Tuzov ▴ 80
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RUVnormalize- should input be pre-normalized?
ruvnormalize microarray normalization
updated 8.8 years ago by ▴ 10 • written 8.9 years ago by ▴ 110
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2
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849
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Removing Unwanted Variations
DESeq2 NanoStringNCTools RUVnormalize RUVSeq DifferentialExpression
12 months ago AZ ▴ 30
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RUVnormalize- How to output a corrected expression matrix without negative values to use for DEG analysis(i.e. limma) ?
RUVnormalize limma corrected expression matrix microarray
updated 6.3 years ago by ★ 1.5k • written 6.3 years ago by • 0
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622
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Is RUVnormalize applicable to small dataset?
RUVnormalize protein mi
5.5 years ago losik • 0
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4
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2.2k
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Confused about using RUVg in getting negative control genes using RUVg
RUVnormalize R edgeR RUVSeq RUVnormalizeData
22 months ago Mohamed ▴ 30
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Technical Replicates and RUVs Normalisation
rnaseq ruvnormalize normalization technical replicates
8.4 years ago thomas.wolfe • 0
12 results • Page 1 of 1
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Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis by Aurora • 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
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A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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