Bioconductor SimpleSingleCell

Showing : simpleSingleCell • reset

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 4.2 years ago by Aaron Lun ★ 28k • written 5.3 years ago by C T ▴ 140

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1.5k

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simpleSingleCell

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by Angelos Armen • 0

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839

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simpleSingleCell

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by Angelos Armen • 0

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DropletUtils EmptyDrops simpleSingleCell

updated 2.4 years ago by Stefano Mangiola ▴ 20 • written 5.4 years ago by shbrief ▴ 20

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1.9k

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scran simpleSingleCell

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by Angelos Armen • 0

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3.1k

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limma edgeR simplesingleCell scran scater

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by Bogdan ▴ 670

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1.9k

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SingleCellExperiment scran limma simpleSingleCell

updated 5.5 years ago by Aaron Lun ★ 28k • written 5.6 years ago by Matt Mulé • 0

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1.9k

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DropletUtils SingleCellExperiement DelayedArray simpleSingleCell

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by Steve Pederson ▴ 170

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2.9k

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singlecellexperiment dropletutils simplesinglecell

updated 6.2 years ago by Aaron Lun ★ 28k • written 6.2 years ago by Peter Hickey ▴ 740

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1.0k

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workflows simplesinglecell

updated 6.3 years ago by Aaron Lun ★ 28k • written 6.3 years ago by es.azadian • 0

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simplesinglecell

updated 6.8 years ago by Aaron Lun ★ 28k • written 6.8 years ago by Xingyu • 0

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scater singlecellexperiment simplesinglecell

updated 6.8 years ago by Aaron Lun ★ 28k • written 6.8 years ago by Xingyu • 0

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3.6k

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scater simpleSingleCell workflows

updated 7.5 years ago by Aaron Lun ★ 28k • written 7.5 years ago by sandmann.t ▴ 70

13 results • Page 1 of 1

Recent ...

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Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Hervé Pagès 16k

> I have requested gDNAx developers for a feature request to turn off seqlevelsStyle(txdb) Yes, that's the right course of action. `seqlev…

Comment: ISO a solution to rank-order introns by transcript by mat149 ▴ 80

Hey, In revisiting this question, the following code works for the '+' strand. I am having issues with demarcating intron rank by transcri…

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

Since the intra-block correlation is negative, it would be best to remove `block` from the model. My experience with genetically identical…

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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