Bioconductor SimpleSingleCell

Showing : simpleSingleCell • reset

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2.3k

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 4.1 years ago by Aaron Lun ★ 28k • written 5.2 years ago by C T ▴ 140

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1.4k

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simpleSingleCell

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by Angelos Armen • 0

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819

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simpleSingleCell

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by Angelos Armen • 0

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4.9k

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DropletUtils EmptyDrops simpleSingleCell

updated 2.3 years ago by Stefano Mangiola ▴ 20 • written 5.3 years ago by shbrief ▴ 20

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1.9k

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scran simpleSingleCell

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by Angelos Armen • 0

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3.1k

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limma edgeR simplesingleCell scran scater

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by Bogdan ▴ 670

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1.9k

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SingleCellExperiment scran limma simpleSingleCell

updated 5.5 years ago by Aaron Lun ★ 28k • written 5.5 years ago by Matt Mulé • 0

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1.9k

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DropletUtils SingleCellExperiement DelayedArray simpleSingleCell

updated 5.5 years ago by Aaron Lun ★ 28k • written 5.5 years ago by Steve Pederson ▴ 170

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2.8k

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singlecellexperiment dropletutils simplesinglecell

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by Peter Hickey ▴ 740

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1.0k

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workflows simplesinglecell

updated 6.2 years ago by Aaron Lun ★ 28k • written 6.2 years ago by es.azadian • 0

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simplesinglecell

updated 6.7 years ago by Aaron Lun ★ 28k • written 6.7 years ago by Xingyu • 0

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scater singlecellexperiment simplesinglecell

updated 6.8 years ago by Aaron Lun ★ 28k • written 6.8 years ago by Xingyu • 0

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scater simpleSingleCell workflows

updated 7.4 years ago by Aaron Lun ★ 28k • written 7.4 years ago by sandmann.t ▴ 70

13 results • Page 1 of 1

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Comment: preprocessIllumina error with EPICv2 array by Rakesh • 0

Amazing, thanks for the help!

Answer: Allele frequencies for ALL alleles of one SNP ? by Robert Castelo ★ 3.4k

Hi, the [GenomicScores](https://bioconductor.org/packages/GenomicSCores) package provides supporting infrastructure to create annotation re…

Answer: preprocessIllumina error with EPICv2 array by James W. MacDonald 67k

You shouldn't need to change the annotation, and certainly not like that. You should never need to use the `@` function directly - there ar…

Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by Haibo Liu • 0

Thank you for your reminder. I did forget that, but I just bumped the version to 1.1.1.

Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by shepherl 4.1k

@haibol2017-23658 make sure you have the valid version bump in the description on our git repository in order for the new version to propa…

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Answer: preprocessIllumina error with EPICv2 array

Answer: UniProt.ws query loading indefinitely

Answer: Package needs internet access

Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela

Awards • All

Scholar to James W. MacDonald 67k