Bioconductor SimpleSingleCell

Showing : simpleSingleCell • reset

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4.5k

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DropletUtils EmptyDrops simpleSingleCell

updated 21 months ago by Stefano Mangiola ▴ 10 • written 4.7 years ago by shbrief ▴ 20

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3.1k

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scater simpleSingleCell workflows

updated 6.9 years ago by Aaron Lun ★ 28k • written 6.9 years ago by sandmann.t ▴ 70

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2.8k

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limma edgeR simplesingleCell scran scater

updated 4.8 years ago by Aaron Lun ★ 28k • written 4.8 years ago by Bogdan ▴ 670

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2.4k

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singlecellexperiment dropletutils simplesinglecell

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by Peter Hickey ▴ 740

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2.0k

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 3.5 years ago by Aaron Lun ★ 28k • written 4.7 years ago by C T ▴ 140

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1.8k

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scater singlecellexperiment simplesinglecell

updated 6.2 years ago by Aaron Lun ★ 28k • written 6.2 years ago by Xingyu • 0

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1.7k

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DropletUtils SingleCellExperiement DelayedArray simpleSingleCell

updated 4.9 years ago by Aaron Lun ★ 28k • written 4.9 years ago by Steve Pederson ▴ 170

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1.6k

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scran simpleSingleCell

updated 4.8 years ago by Aaron Lun ★ 28k • written 4.8 years ago by Angelos Armen • 0

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1.6k

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SingleCellExperiment scran limma simpleSingleCell

updated 4.9 years ago by Aaron Lun ★ 28k • written 4.9 years ago by Matt Mulé • 0

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1.2k

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simpleSingleCell

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by Angelos Armen • 0

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950

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simplesinglecell

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by Xingyu • 0

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853

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workflows simplesinglecell

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by es.azadian • 0

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675

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simpleSingleCell

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by Angelos Armen • 0

13 results • Page 1 of 1

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Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…

Comment: Timecourse RNASeq analysis by Aurora • 0

I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…

Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130

But.. How to run a temporal assay?

Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Votes

A: Print Differentially Expressed Exons From Dexseq Results

stuck on unimplemented type 'list' in 'EncodeElement'

Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

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